Miyakogusa Predicted Gene

Lj0g3v0262469.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262469.1 Non Chatacterized Hit- tr|I3T3J1|I3T3J1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,95.73,0,RING
FINGER,NULL; seg,NULL; no description,Zinc finger, RING/FYVE/PHD-type;
zf-rbx1,Zinc finger, RIN,CUFF.17281.1
         (117 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G20570.1 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | c...   187   1e-48
AT5G20570.3 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | c...   176   4e-45
AT3G42830.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   174   8e-45
AT5G20570.2 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 | c...   173   2e-44
AT3G05870.2 | Symbols: APC11 | anaphase-promoting complex/cyclos...    67   2e-12
AT3G05870.1 | Symbols: APC11 | anaphase-promoting complex/cyclos...    67   2e-12

>AT5G20570.1 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 |
           chr5:6956905-6958221 REVERSE LENGTH=118
          Length = 118

 Score =  187 bits (474), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/116 (80%), Positives = 95/116 (81%), Gaps = 2/116 (1%)

Query: 4   TLDSDVAMVXXXXXXXXXXXX--XXXXXRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 61
           TLDSDV M+                   RFEIKKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 62  CIECQANQASPTSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117
           CIECQANQAS TSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 63  CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118


>AT5G20570.3 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 |
           chr5:6956905-6958221 REVERSE LENGTH=136
          Length = 136

 Score =  176 bits (445), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/134 (68%), Positives = 94/134 (70%), Gaps = 20/134 (14%)

Query: 4   TLDSDVAMVXXXXXXXXXXXXX--XXXXRFEIKKWNAVALWAWD---------------- 45
           TLDSDV M+                   RFEIKKW+AVALWAW                 
Sbjct: 3   TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWGNLENPYTLSSIGLSMF 62

Query: 46  --IVVDNCAICRNHIMDLCIECQANQASPTSEECTVAWGVCNHAFHFHCISRWLKTRQVC 103
             IVVDNCAICRNHIMDLCIECQANQAS TSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Sbjct: 63  RYIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 122

Query: 104 PLDNSEWEFQKYGH 117
           PLDNSEWEFQKYGH
Sbjct: 123 PLDNSEWEFQKYGH 136


>AT3G42830.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:14929714-14930678 REVERSE LENGTH=115
          Length = 115

 Score =  174 bits (442), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 82/88 (93%), Positives = 84/88 (95%)

Query: 30  RFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASPTSEECTVAWGVCNHAFH 89
           RFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQAS TSEECTVAWGVCNHAFH
Sbjct: 28  RFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWGVCNHAFH 87

Query: 90  FHCISRWLKTRQVCPLDNSEWEFQKYGH 117
           FHCISRWLKTRQVCPLD  EWEFQKYGH
Sbjct: 88  FHCISRWLKTRQVCPLDVCEWEFQKYGH 115


>AT5G20570.2 | Symbols: ROC1, RBX1, HRT1, ATRBX1 | RING-box 1 |
           chr5:6956905-6958221 REVERSE LENGTH=142
          Length = 142

 Score =  173 bits (439), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/140 (66%), Positives = 95/140 (67%), Gaps = 26/140 (18%)

Query: 4   TLDSDVAMVXXXXXXXXXXXX--XXXXXRFEIKKWNAVALWAWDIVVDNCAICRNHIMDL 61
           TLDSDV M+                   RFEIKKW+AVALWAWDIVVDNCAICRNHIMDL
Sbjct: 3   TLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDL 62

Query: 62  CIECQANQASPTSEECTVAW------------------------GVCNHAFHFHCISRWL 97
           CIECQANQAS TSEECTVAW                        GVCNHAFHFHCISRWL
Sbjct: 63  CIECQANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISRWL 122

Query: 98  KTRQVCPLDNSEWEFQKYGH 117
           KTRQVCPLDNSEWEFQKYGH
Sbjct: 123 KTRQVCPLDNSEWEFQKYGH 142


>AT3G05870.2 | Symbols: APC11 | anaphase-promoting complex/cyclosome
           11 | chr3:1753961-1754802 FORWARD LENGTH=87
          Length = 87

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 31  FEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASPTSEECTVAWGVCNHAFHF 90
             I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH 
Sbjct: 6   LRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHL 60

Query: 91  HCISRWLKTRQV---CPLDNSEWEFQK 114
           HCI +W+ ++     CP+   EW+F++
Sbjct: 61  HCILKWVNSQTSQAHCPMCRREWQFKE 87


>AT3G05870.1 | Symbols: APC11 | anaphase-promoting complex/cyclosome
           11 | chr3:1753961-1754802 FORWARD LENGTH=87
          Length = 87

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 31  FEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASPTSEECTVAWGVCNHAFHF 90
             I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH 
Sbjct: 6   LRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAFHL 60

Query: 91  HCISRWLKTRQV---CPLDNSEWEFQK 114
           HCI +W+ ++     CP+   EW+F++
Sbjct: 61  HCILKWVNSQTSQAHCPMCRREWQFKE 87