Miyakogusa Predicted Gene
- Lj0g3v0262109.4
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0262109.4 tr|Q9FGE6|Q9FGE6_ARATH CTC-interacting domain 13
protein OS=Arabidopsis thaliana GN=CID13 PE=4
SV=1,46.67,0.000000004,RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; RRM,RNA recognition m,CUFF.17275.4
(125 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 144 1e-35
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 140 1e-34
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting d... 140 2e-34
AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 1... 135 9e-33
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 130 1e-31
AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 130 2e-31
AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:48... 129 5e-31
AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 | chr3:... 122 4e-29
AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 | chr3:... 122 4e-29
AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5:... 115 6e-27
>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875174-11877188 REVERSE LENGTH=358
Length = 358
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/125 (60%), Positives = 81/125 (64%), Gaps = 33/125 (26%)
Query: 1 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
MC+RTIYCTNIDKK+TQ+DVK FFES CGEV RLRLLGDY HSTRIAF EF +AESAIAA
Sbjct: 267 MCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAA 326
Query: 61 LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
L+CSGV LGSLPI RVSPSKTPVR R
Sbjct: 327 LNCSGVVLGSLPI---------------------------------RVSPSKTPVRPRSP 353
Query: 121 RSPMH 125
R PMH
Sbjct: 354 RHPMH 358
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 4 RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
RT+Y +++D+++T+ + F S CG+V R+ GD + R AF EFT E A+ AL+
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNL 231
Query: 64 SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
SG LG P++V L S+T + T L
Sbjct: 232 SGTMLGFYPVKV-----LPSKTAIAPVNPTFL 258
>AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875028-11877188 REVERSE LENGTH=406
Length = 406
Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 92/125 (73%), Gaps = 6/125 (4%)
Query: 1 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
MC+RTIYCTNIDKK+TQ+DVK FFES CGEV RLRLLGDY HSTRIAF EF +AESAIAA
Sbjct: 267 MCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAA 326
Query: 61 LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
L+CSGV LGSLPIR F + + E L+++LQ+F+ L +SP + R VL
Sbjct: 327 LNCSGVVLGSLPIR--SSFKDACSSEITEASNALILALQVFTYL---MSP-QYIYRCVVL 380
Query: 121 RSPMH 125
++ +H
Sbjct: 381 KTALH 385
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 4 RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
RT+Y +++D+++T+ + F S CG+V R+ GD + R AF EFT E A+ AL+
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNL 231
Query: 64 SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
SG LG P++V L S+T + T L
Sbjct: 232 SGTMLGFYPVKV-----LPSKTAIAPVNPTFL 258
>AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
domain 12 | chr4:6557336-6559143 FORWARD LENGTH=336
Length = 336
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 81/126 (64%), Gaps = 34/126 (26%)
Query: 1 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
MC+RTIYCTNIDKKLTQ D+K FFES+CGEV RLRLLGDYHH TRI F EF +AESAIAA
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAA 303
Query: 61 LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
L+CSGV LGSLPI RVSPSKTPVRSR +
Sbjct: 304 LNCSGVLLGSLPI---------------------------------RVSPSKTPVRSRAI 330
Query: 121 -RSPMH 125
R MH
Sbjct: 331 PRHQMH 336
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 4 RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
RT+Y ++ID+++T+ + F G+V R+ GD + R AF EFT A AL+
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGF-GQVVDCRICGDPNSVLRFAFIEFTDEVGARTALNL 208
Query: 64 SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
SG LG P++V + S+T + T L
Sbjct: 209 SGTMLGFYPVKV-----MPSKTAIAPVNPTFL 235
>AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 12 |
chr4:6557336-6559019 FORWARD LENGTH=326
Length = 326
Score = 135 bits (339), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 70/81 (86%)
Query: 1 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
MC+RTIYCTNIDKKLTQ D+K FFES+CGEV RLRLLGDYHH TRI F EF +AESAIAA
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAA 303
Query: 61 LSCSGVALGSLPIRVGDRFSL 81
L+CSGV LGSLPIR ++ +L
Sbjct: 304 LNCSGVLLGSLPIRSKNKPTL 324
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 4 RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
RT+Y ++ID+++T+ + F G+V R+ GD + R AF EFT A AL+
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGF-GQVVDCRICGDPNSVLRFAFIEFTDEVGARTALNL 208
Query: 64 SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
SG LG P++V + S+T + T L
Sbjct: 209 SGTMLGFYPVKV-----MPSKTAIAPVNPTFL 235
>AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=314
Length = 314
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 76/123 (61%), Gaps = 33/123 (26%)
Query: 1 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
MCSRTIYCTN+DK T+ DV FF+S CGEV RLRLLGD HSTRIAF EF +AESA+AA
Sbjct: 222 MCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAA 281
Query: 61 LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
L+CSG+ LGS PI RVSPSKTPVRSR+
Sbjct: 282 LNCSGIVLGSQPI---------------------------------RVSPSKTPVRSRIT 308
Query: 121 RSP 123
RSP
Sbjct: 309 RSP 311
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 4 RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
RT+Y ++ID+ +T+ + F S CG+V R+ GD + R AF EF+ + A +ALS
Sbjct: 128 RTVYVSDIDQSVTEEGLAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSL 186
Query: 64 SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
G +G P+RV L S+T +L T L
Sbjct: 187 GGTMIGYYPVRV-----LPSKTAILPVNPTFL 213
>AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=308
Length = 308
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 76/123 (61%), Gaps = 33/123 (26%)
Query: 1 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
MCSRTIYCTN+DK T+ DV FF+S CGEV RLRLLGD HSTRIAF EF +AESA+AA
Sbjct: 216 MCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAA 275
Query: 61 LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
L+CSG+ LGS PI RVSPSKTPVRSR+
Sbjct: 276 LNCSGIVLGSQPI---------------------------------RVSPSKTPVRSRIT 302
Query: 121 RSP 123
RSP
Sbjct: 303 RSP 305
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 4 RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
RT+Y ++ID+ +T+ + F S CG+V R+ GD + R AF EF+ + A +ALS
Sbjct: 122 RTVYVSDIDQSVTEEGLAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSL 180
Query: 64 SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
G +G P+RV L S+T +L T L
Sbjct: 181 GGTMIGYYPVRV-----LPSKTAILPVNPTFL 207
>AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 |
chr3:4849788-4851601 FORWARD LENGTH=327
Length = 327
Score = 129 bits (324), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 79/123 (64%), Gaps = 33/123 (26%)
Query: 1 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
MC+RTIYCTNIDKK++QADV++FFES CGEV RLRLLGD HSTRIAF EF +A+SA++A
Sbjct: 235 MCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALSA 294
Query: 61 LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
L+CSG+ +GS PI RVSPSKTPVR R+
Sbjct: 295 LNCSGMVVGSQPI---------------------------------RVSPSKTPVRPRIT 321
Query: 121 RSP 123
R P
Sbjct: 322 RPP 324
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 4 RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R AF EF + A ALS
Sbjct: 141 RTVYVSDIDQSVTEEGLAGLF-SNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSL 199
Query: 64 SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
G LG P+RV L S+T +L T L
Sbjct: 200 GGTMLGFYPVRV-----LPSKTAILPVNPTFL 226
>AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 |
chr3:18314901-18317658 REVERSE LENGTH=353
Length = 353
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
Query: 1 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
MC RT+YCTNIDK++TQ D+K FFE +CGEV RLRL GDYHH TRIAF EF +AESAIAA
Sbjct: 263 MCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAA 321
Query: 61 LSCSGVALGSLPIRV 75
L CSG+ LG+LPIRV
Sbjct: 322 LHCSGIVLGALPIRV 336
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 4 RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
RT+Y ++ID+++T+ ++ F + CG+V R+ GD + R AF EFT E A AALS
Sbjct: 169 RTVYVSDIDQQVTEENLAGVFIN-CGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSM 227
Query: 64 SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
SG LG P++V L S+T + T L
Sbjct: 228 SGTVLGFYPLKV-----LPSKTAIAPVNPTFL 254
>AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 |
chr3:18314901-18317658 REVERSE LENGTH=353
Length = 353
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 64/75 (85%), Gaps = 1/75 (1%)
Query: 1 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
MC RT+YCTNIDK++TQ D+K FFE +CGEV RLRL GDYHH TRIAF EF +AESAIAA
Sbjct: 263 MCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAA 321
Query: 61 LSCSGVALGSLPIRV 75
L CSG+ LG+LPIRV
Sbjct: 322 LHCSGIVLGALPIRV 336
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 6/92 (6%)
Query: 4 RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
RT+Y ++ID+++T+ ++ F + CG+V R+ GD + R AF EFT E A AALS
Sbjct: 169 RTVYVSDIDQQVTEENLAGVFIN-CGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSM 227
Query: 64 SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
SG LG P++V L S+T + T L
Sbjct: 228 SGTVLGFYPLKV-----LPSKTAIAPVNPTFL 254
>AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 |
chr5:8345402-8347776 REVERSE LENGTH=320
Length = 320
Score = 115 bits (289), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 65/74 (87%)
Query: 2 CSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAAL 61
C +T+YCTNIDK++T+ ++++FF+++CGEV LRLLGD++H TRIAF EF +AESAI+AL
Sbjct: 232 CGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESAISAL 291
Query: 62 SCSGVALGSLPIRV 75
+CSGV LG LPIRV
Sbjct: 292 NCSGVVLGELPIRV 305
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 1 MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
M RT+Y ++ID ++T+ + F S CG+V R+ GDY R AF EFT AE A +A
Sbjct: 134 MIKRTVYVSDIDNQVTEEQLASLFLS-CGQVVDCRMCGDYKSILRFAFIEFTDAEGARSA 192
Query: 61 LSCSGVALGSLPIRV 75
L SG GS PIRV
Sbjct: 193 LRKSGTMFGSHPIRV 207