Miyakogusa Predicted Gene

Lj0g3v0262109.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0262109.1 tr|Q9FGE6|Q9FGE6_ARATH CTC-interacting domain 13
protein OS=Arabidopsis thaliana GN=CID13 PE=4
SV=1,46.67,0.000000004,RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; RRM,RNA recognition m,CUFF.17275.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:...   144   1e-35
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:...   140   1e-34
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting d...   140   2e-34
AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 1...   135   9e-33
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20...   130   1e-31
AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20...   130   2e-31
AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:48...   129   5e-31
AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 | chr3:...   122   4e-29
AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 | chr3:...   122   4e-29
AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5:...   115   6e-27

>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
           chr1:11875174-11877188 REVERSE LENGTH=358
          Length = 358

 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 81/125 (64%), Gaps = 33/125 (26%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC+RTIYCTNIDKK+TQ+DVK FFES CGEV RLRLLGDY HSTRIAF EF +AESAIAA
Sbjct: 267 MCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAA 326

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           L+CSGV LGSLPI                                 RVSPSKTPVR R  
Sbjct: 327 LNCSGVVLGSLPI---------------------------------RVSPSKTPVRPRSP 353

Query: 121 RSPMH 125
           R PMH
Sbjct: 354 RHPMH 358



 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y +++D+++T+  +   F S CG+V   R+ GD +   R AF EFT  E A+ AL+ 
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNL 231

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           SG  LG  P++V     L S+T +     T L
Sbjct: 232 SGTMLGFYPVKV-----LPSKTAIAPVNPTFL 258


>AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 |
           chr1:11875028-11877188 REVERSE LENGTH=406
          Length = 406

 Score =  140 bits (354), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/125 (60%), Positives = 92/125 (73%), Gaps = 6/125 (4%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC+RTIYCTNIDKK+TQ+DVK FFES CGEV RLRLLGDY HSTRIAF EF +AESAIAA
Sbjct: 267 MCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAA 326

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           L+CSGV LGSLPIR    F     + + E    L+++LQ+F+ L   +SP +   R  VL
Sbjct: 327 LNCSGVVLGSLPIR--SSFKDACSSEITEASNALILALQVFTYL---MSP-QYIYRCVVL 380

Query: 121 RSPMH 125
           ++ +H
Sbjct: 381 KTALH 385



 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y +++D+++T+  +   F S CG+V   R+ GD +   R AF EFT  E A+ AL+ 
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNL 231

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           SG  LG  P++V     L S+T +     T L
Sbjct: 232 SGTMLGFYPVKV-----LPSKTAIAPVNPTFL 258


>AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
           domain 12 | chr4:6557336-6559143 FORWARD LENGTH=336
          Length = 336

 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 81/126 (64%), Gaps = 34/126 (26%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC+RTIYCTNIDKKLTQ D+K FFES+CGEV RLRLLGDYHH TRI F EF +AESAIAA
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAA 303

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           L+CSGV LGSLPI                                 RVSPSKTPVRSR +
Sbjct: 304 LNCSGVLLGSLPI---------------------------------RVSPSKTPVRSRAI 330

Query: 121 -RSPMH 125
            R  MH
Sbjct: 331 PRHQMH 336



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y ++ID+++T+  +   F    G+V   R+ GD +   R AF EFT    A  AL+ 
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGF-GQVVDCRICGDPNSVLRFAFIEFTDEVGARTALNL 208

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           SG  LG  P++V     + S+T +     T L
Sbjct: 209 SGTMLGFYPVKV-----MPSKTAIAPVNPTFL 235


>AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 12 |
           chr4:6557336-6559019 FORWARD LENGTH=326
          Length = 326

 Score =  135 bits (339), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 70/81 (86%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC+RTIYCTNIDKKLTQ D+K FFES+CGEV RLRLLGDYHH TRI F EF +AESAIAA
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAA 303

Query: 61  LSCSGVALGSLPIRVGDRFSL 81
           L+CSGV LGSLPIR  ++ +L
Sbjct: 304 LNCSGVLLGSLPIRSKNKPTL 324



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y ++ID+++T+  +   F    G+V   R+ GD +   R AF EFT    A  AL+ 
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGF-GQVVDCRICGDPNSVLRFAFIEFTDEVGARTALNL 208

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           SG  LG  P++V     + S+T +     T L
Sbjct: 209 SGTMLGFYPVKV-----MPSKTAIAPVNPTFL 235


>AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 |
           chr1:20029262-20031243 REVERSE LENGTH=314
          Length = 314

 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 76/123 (61%), Gaps = 33/123 (26%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MCSRTIYCTN+DK  T+ DV  FF+S CGEV RLRLLGD  HSTRIAF EF +AESA+AA
Sbjct: 222 MCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAA 281

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           L+CSG+ LGS PI                                 RVSPSKTPVRSR+ 
Sbjct: 282 LNCSGIVLGSQPI---------------------------------RVSPSKTPVRSRIT 308

Query: 121 RSP 123
           RSP
Sbjct: 309 RSP 311



 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y ++ID+ +T+  +   F S CG+V   R+ GD +   R AF EF+  + A +ALS 
Sbjct: 128 RTVYVSDIDQSVTEEGLAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSL 186

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
            G  +G  P+RV     L S+T +L    T L
Sbjct: 187 GGTMIGYYPVRV-----LPSKTAILPVNPTFL 213


>AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 |
           chr1:20029262-20031243 REVERSE LENGTH=308
          Length = 308

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 76/123 (61%), Gaps = 33/123 (26%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MCSRTIYCTN+DK  T+ DV  FF+S CGEV RLRLLGD  HSTRIAF EF +AESA+AA
Sbjct: 216 MCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAA 275

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           L+CSG+ LGS PI                                 RVSPSKTPVRSR+ 
Sbjct: 276 LNCSGIVLGSQPI---------------------------------RVSPSKTPVRSRIT 302

Query: 121 RSP 123
           RSP
Sbjct: 303 RSP 305



 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y ++ID+ +T+  +   F S CG+V   R+ GD +   R AF EF+  + A +ALS 
Sbjct: 122 RTVYVSDIDQSVTEEGLAGLFSS-CGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALSL 180

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
            G  +G  P+RV     L S+T +L    T L
Sbjct: 181 GGTMIGYYPVRV-----LPSKTAILPVNPTFL 207


>AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 |
           chr3:4849788-4851601 FORWARD LENGTH=327
          Length = 327

 Score =  129 bits (324), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 79/123 (64%), Gaps = 33/123 (26%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC+RTIYCTNIDKK++QADV++FFES CGEV RLRLLGD  HSTRIAF EF +A+SA++A
Sbjct: 235 MCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALSA 294

Query: 61  LSCSGVALGSLPIRVGDRFSLISRTNVLETRATLLMSLQLFSCLVCRVSPSKTPVRSRVL 120
           L+CSG+ +GS PI                                 RVSPSKTPVR R+ 
Sbjct: 295 LNCSGMVVGSQPI---------------------------------RVSPSKTPVRPRIT 321

Query: 121 RSP 123
           R P
Sbjct: 322 RPP 324



 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y ++ID+ +T+  +   F S CG+V   R+ GD H   R AF EF   + A  ALS 
Sbjct: 141 RTVYVSDIDQSVTEEGLAGLF-SNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSL 199

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
            G  LG  P+RV     L S+T +L    T L
Sbjct: 200 GGTMLGFYPVRV-----LPSKTAILPVNPTFL 226


>AT3G49390.2 | Symbols: CID10 | CTC-interacting domain 10 |
           chr3:18314901-18317658 REVERSE LENGTH=353
          Length = 353

 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 64/75 (85%), Gaps = 1/75 (1%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC RT+YCTNIDK++TQ D+K FFE +CGEV RLRL GDYHH TRIAF EF +AESAIAA
Sbjct: 263 MCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAA 321

Query: 61  LSCSGVALGSLPIRV 75
           L CSG+ LG+LPIRV
Sbjct: 322 LHCSGIVLGALPIRV 336



 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y ++ID+++T+ ++   F + CG+V   R+ GD +   R AF EFT  E A AALS 
Sbjct: 169 RTVYVSDIDQQVTEENLAGVFIN-CGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSM 227

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           SG  LG  P++V     L S+T +     T L
Sbjct: 228 SGTVLGFYPLKV-----LPSKTAIAPVNPTFL 254


>AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 |
           chr3:18314901-18317658 REVERSE LENGTH=353
          Length = 353

 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 64/75 (85%), Gaps = 1/75 (1%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           MC RT+YCTNIDK++TQ D+K FFE +CGEV RLRL GDYHH TRIAF EF +AESAIAA
Sbjct: 263 MCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAA 321

Query: 61  LSCSGVALGSLPIRV 75
           L CSG+ LG+LPIRV
Sbjct: 322 LHCSGIVLGALPIRV 336



 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 6/92 (6%)

Query: 4   RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAALSC 63
           RT+Y ++ID+++T+ ++   F + CG+V   R+ GD +   R AF EFT  E A AALS 
Sbjct: 169 RTVYVSDIDQQVTEENLAGVFIN-CGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSM 227

Query: 64  SGVALGSLPIRVGDRFSLISRTNVLETRATLL 95
           SG  LG  P++V     L S+T +     T L
Sbjct: 228 SGTVLGFYPLKV-----LPSKTAIAPVNPTFL 254


>AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 |
           chr5:8345402-8347776 REVERSE LENGTH=320
          Length = 320

 Score =  115 bits (289), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 65/74 (87%)

Query: 2   CSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAAL 61
           C +T+YCTNIDK++T+ ++++FF+++CGEV  LRLLGD++H TRIAF EF +AESAI+AL
Sbjct: 232 CGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESAISAL 291

Query: 62  SCSGVALGSLPIRV 75
           +CSGV LG LPIRV
Sbjct: 292 NCSGVVLGELPIRV 305



 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 1   MCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFFEFTVAESAIAA 60
           M  RT+Y ++ID ++T+  +   F S CG+V   R+ GDY    R AF EFT AE A +A
Sbjct: 134 MIKRTVYVSDIDNQVTEEQLASLFLS-CGQVVDCRMCGDYKSILRFAFIEFTDAEGARSA 192

Query: 61  LSCSGVALGSLPIRV 75
           L  SG   GS PIRV
Sbjct: 193 LRKSGTMFGSHPIRV 207