Miyakogusa Predicted Gene

Lj0g3v0261929.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0261929.2 Non Chatacterized Hit- tr|I1LLB7|I1LLB7_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,77.5,0,INTEGRATOR COMPLEX SUBUNIT 9,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL,CUFF.17237.2
         (443 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07530.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Beta-Casp ...   478   e-135

>AT3G07530.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Beta-Casp
           domain (InterPro:IPR022712); BEST Arabidopsis thaliana
           protein match is: cleavage and polyadenylation
           specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1);
           Has 624 Blast hits to 615 proteins in 160 species:
           Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44;
           Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source:
           NCBI BLink). | chr3:2400793-2404280 FORWARD LENGTH=699
          Length = 699

 Score =  478 bits (1230), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/442 (52%), Positives = 323/442 (73%), Gaps = 6/442 (1%)

Query: 1   MKFTCLSKGDGFHFPPCHMLEFCGIRILLDCPLDLSALIAFSPVPNASDVSSFEESNNTE 60
           M+ TCLSKGDGFH+PPCHML  CG RIL+DCPLDLSA+  FSPVP  S V S  E++   
Sbjct: 1   MELTCLSKGDGFHYPPCHMLNLCGFRILIDCPLDLSAIKIFSPVP--SGVGS--EASEYL 56

Query: 61  ANSFLNSVAQSQKRQKIDKPLDGKSLLFAEPWYKTVNNLHLWNASFIDVILISSPMGIMG 120
           ++  L++    QK+QK+++ L    L+  EPWYKTV  LHLW ASFID++LIS+PMG++G
Sbjct: 57  SDESLDAQNPIQKKQKLERQLTCADLVCEEPWYKTVKALHLWEASFIDIVLISNPMGLLG 116

Query: 121 LPFLTRTKGFSAKIYVTEASARLGQLMMEELVSMHGEFRQFYGPGESNFPPWLKQEELEM 180
           LPFLT+  GF AKIY+TE +A++GQLMME++VSMH EFR F+GP  S+FP W+K  + E 
Sbjct: 117 LPFLTQNPGFFAKIYMTEVTAKIGQLMMEDIVSMHKEFRCFHGPDNSSFPGWIKNLDSEQ 176

Query: 181 LPSILREIISGKDGGELGGWMPLYSAADVKDCLLKIHTLKYAEEACYNGTLVIKAFSSGV 240
           +P++L++++ G+ G +LG WM LYS  D++ C+ K+  +K+AEE CYNGTL+IKA SSG+
Sbjct: 177 VPALLKKVVFGESGDDLGSWMRLYSLDDIESCMKKVQGVKFAEEVCYNGTLIIKALSSGL 236

Query: 241 EIGSCNWIMNGPKGDIAYLSSSSFFSAHAMTFDYRSLQGSCTLIYSDFSALSDVQEVEAG 300
           +IG+CNW++NGP G ++Y+S S F S HA +FD+  L+ +  LIYSDFS+L   +  E  
Sbjct: 237 DIGACNWLINGPNGSLSYVSDSIFVSHHARSFDFHGLKETDVLIYSDFSSLQSAEVTE-- 294

Query: 301 DSYSIRTADALLPQSVQDLDEFNLNSDENSEEKEKLVFICSCAIECVKIGGSVLVPVNRL 360
           D      +D     ++ D  +  LN++++ EE EKL F+CSCA E    GGS L+ + R+
Sbjct: 295 DGCISPDSDNNYISTISDNKDSLLNTEDSLEEMEKLAFVCSCAAESADAGGSTLITITRI 354

Query: 361 GTILQLLEEITTSLEALAMKVPVYIISSVAEELLALLNVIPEWLCKQRQERLFAGEPLFA 420
           G +LQLLE ++ SLE+ ++KVP+++ISSVAEELLA  N IPEWLC+QRQE+L +GEP F 
Sbjct: 355 GIVLQLLELLSNSLESSSLKVPIFVISSVAEELLAYTNTIPEWLCEQRQEKLISGEPSFG 414

Query: 421 HVKLLKEKKIHVVPDVLSPQLL 442
           H+K +K KKIH+ P + SP L+
Sbjct: 415 HLKFIKNKKIHLFPAIHSPNLI 436