Miyakogusa Predicted Gene

Lj0g3v0261909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0261909.1 Non Chatacterized Hit- tr|B9SDQ1|B9SDQ1_RICCO
Ubiquitin carboxyl-terminal hydrolase, putative
OS=Ric,56.43,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.17233.1
         (316 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06600.2 | Symbols: UBP12 | ubiquitin-specific protease 12 | ...   358   2e-99
AT5G06600.1 | Symbols: UBP12 | ubiquitin-specific protease 12 | ...   358   2e-99
AT3G11910.1 | Symbols: UBP13 | ubiquitin-specific protease 13 | ...   342   2e-94
AT3G11910.2 | Symbols: UBP13 | ubiquitin-specific protease 13 | ...   342   2e-94
AT5G06600.3 | Symbols: UBP12 | ubiquitin-specific protease 12 | ...   264   6e-71

>AT5G06600.2 | Symbols: UBP12 | ubiquitin-specific protease 12 |
            chr5:2019545-2027834 REVERSE LENGTH=1115
          Length = 1115

 Score =  358 bits (920), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 185/341 (54%), Positives = 249/341 (73%), Gaps = 31/341 (9%)

Query: 1    MVGFPFSCDEEIELYE-----------------------LENGDILCFQRSAHDSDTDCL 37
            MVGF  + DEEIEL+E                       +E+GDI+CFQ+   + + +CL
Sbjct: 729  MVGF--APDEEIELFEEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQKPLVNKEIECL 786

Query: 38   LPNIPSFLEHMHNRQVVCFRSLERPNDEGFYLELSKANGYDDIVKRLARHIGLDDPSKIR 97
             P +PSFLE++ NRQ+V FR+LE+P ++ F LELSK + YDD+V+++A  +GLDDPSK+R
Sbjct: 787  YPAVPSFLEYVQNRQLVRFRALEKPKEDEFVLELSKQHTYDDVVEKVAEKLGLDDPSKLR 846

Query: 98   LTSHNCFSRQPNPDPIRYRGVKNLLDMLVNCNQTSVIMYYEVLDIPLPQLQDLKCLRVAF 157
            LTSHNC+S+QP P PI+YRGV +L DMLV+ NQTS I+YYEVLDIPLP+LQ LK L+VAF
Sbjct: 847  LTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAF 906

Query: 158  YYSTKNEVLSYLIRMPNHSTVMDMISQLKNKLQLSSPDANLKLLQVLDHKIYKTYSYDEK 217
            +++TK EV+ + IR+P  STV D+I++LK K++LS PDA L+LL+V  HKIYK +   E+
Sbjct: 907  HHATKEEVVIHNIRLPKQSTVGDVINELKTKVELSHPDAELRLLEVFYHKIYKIFPSTER 966

Query: 218  IGDISSHH-TLRVVEIP-DEKSLGPSDILIPVSHFFRETGPKNHNQMKIKRFGEPFMLVI 275
            I +I+  + TLR  EIP +EK++GP+D LI V HF +ETG    NQ +++ FGEPF LVI
Sbjct: 967  IENINDQYWTLRAEEIPEEEKNIGPNDRLILVYHFAKETG---QNQ-QVQNFGEPFFLVI 1022

Query: 276  HEGETLAKVKVKIQSKLHVPAKDFDKWKFAFLSLDDPNYLQ 316
            HEGETL ++K +IQ KLHV  +DF KWKFAF+S+  P YLQ
Sbjct: 1023 HEGETLEEIKNRIQKKLHVSDEDFAKWKFAFMSMGRPEYLQ 1063


>AT5G06600.1 | Symbols: UBP12 | ubiquitin-specific protease 12 |
            chr5:2019545-2027834 REVERSE LENGTH=1116
          Length = 1116

 Score =  358 bits (920), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 185/341 (54%), Positives = 249/341 (73%), Gaps = 31/341 (9%)

Query: 1    MVGFPFSCDEEIELYE-----------------------LENGDILCFQRSAHDSDTDCL 37
            MVGF  + DEEIEL+E                       +E+GDI+CFQ+   + + +CL
Sbjct: 730  MVGF--APDEEIELFEEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQKPLVNKEIECL 787

Query: 38   LPNIPSFLEHMHNRQVVCFRSLERPNDEGFYLELSKANGYDDIVKRLARHIGLDDPSKIR 97
             P +PSFLE++ NRQ+V FR+LE+P ++ F LELSK + YDD+V+++A  +GLDDPSK+R
Sbjct: 788  YPAVPSFLEYVQNRQLVRFRALEKPKEDEFVLELSKQHTYDDVVEKVAEKLGLDDPSKLR 847

Query: 98   LTSHNCFSRQPNPDPIRYRGVKNLLDMLVNCNQTSVIMYYEVLDIPLPQLQDLKCLRVAF 157
            LTSHNC+S+QP P PI+YRGV +L DMLV+ NQTS I+YYEVLDIPLP+LQ LK L+VAF
Sbjct: 848  LTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAF 907

Query: 158  YYSTKNEVLSYLIRMPNHSTVMDMISQLKNKLQLSSPDANLKLLQVLDHKIYKTYSYDEK 217
            +++TK EV+ + IR+P  STV D+I++LK K++LS PDA L+LL+V  HKIYK +   E+
Sbjct: 908  HHATKEEVVIHNIRLPKQSTVGDVINELKTKVELSHPDAELRLLEVFYHKIYKIFPSTER 967

Query: 218  IGDISSHH-TLRVVEIP-DEKSLGPSDILIPVSHFFRETGPKNHNQMKIKRFGEPFMLVI 275
            I +I+  + TLR  EIP +EK++GP+D LI V HF +ETG    NQ +++ FGEPF LVI
Sbjct: 968  IENINDQYWTLRAEEIPEEEKNIGPNDRLILVYHFAKETG---QNQ-QVQNFGEPFFLVI 1023

Query: 276  HEGETLAKVKVKIQSKLHVPAKDFDKWKFAFLSLDDPNYLQ 316
            HEGETL ++K +IQ KLHV  +DF KWKFAF+S+  P YLQ
Sbjct: 1024 HEGETLEEIKNRIQKKLHVSDEDFAKWKFAFMSMGRPEYLQ 1064


>AT3G11910.1 | Symbols: UBP13 | ubiquitin-specific protease 13 |
            chr3:3761758-3770290 REVERSE LENGTH=1115
          Length = 1115

 Score =  342 bits (877), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 177/340 (52%), Positives = 244/340 (71%), Gaps = 31/340 (9%)

Query: 1    MVGFPFSCDEEIELYE-----------------------LENGDILCFQRSAHDSDTDCL 37
            M GF  + DEEIEL+E                       +E+GDI+C+Q+     +++  
Sbjct: 729  MAGF--APDEEIELFEEIKFEPCVMCEQIDKKTSFRLCQIEDGDIICYQKPLSIEESEFR 786

Query: 38   LPNIPSFLEHMHNRQVVCFRSLERPNDEGFYLELSKANGYDDIVKRLARHIGLDDPSKIR 97
             P++PSFLE++ NR++V FR+LE+P ++ F +ELSK + YDD+V+R+A  +GLDDPSK+R
Sbjct: 787  YPDVPSFLEYVQNRELVRFRTLEKPKEDEFTMELSKLHTYDDVVERVAEKLGLDDPSKLR 846

Query: 98   LTSHNCFSRQPNPDPIRYRGVKNLLDMLVNCNQTSVIMYYEVLDIPLPQLQDLKCLRVAF 157
            LTSHNC+S+QP P PI+YRGV +L DMLV+ NQTS I+YYEVLDIPLP+LQ LK L+VAF
Sbjct: 847  LTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAF 906

Query: 158  YYSTKNEVLSYLIRMPNHSTVMDMISQLKNKLQLSSPDANLKLLQVLDHKIYKTYSYDEK 217
            + +TK+EV+ + IR+P  STV D+I++LK K++LS  DA L+LL+V  HKIYK +   E+
Sbjct: 907  HSATKDEVIIHNIRLPKQSTVGDVINELKTKVELSHQDAELRLLEVFFHKIYKIFPSTER 966

Query: 218  IGDISSHH-TLRVVEIP-DEKSLGPSDILIPVSHFFRETGPKNHNQMKIKRFGEPFMLVI 275
            I +I+  + TLR  EIP +EK++GP+D LI V HF +E G    NQ +++ FGEPF LVI
Sbjct: 967  IENINDQYWTLRAEEIPEEEKNIGPNDRLIHVYHFTKEAG---QNQ-QVQNFGEPFFLVI 1022

Query: 276  HEGETLAKVKVKIQSKLHVPAKDFDKWKFAFLSLDDPNYL 315
            HEGETL ++K +IQ KLHVP +DF KWKFA  S+  P+YL
Sbjct: 1023 HEGETLEEIKTRIQKKLHVPDEDFAKWKFASFSMGRPDYL 1062


>AT3G11910.2 | Symbols: UBP13 | ubiquitin-specific protease 13 |
            chr3:3761758-3770290 REVERSE LENGTH=1114
          Length = 1114

 Score =  342 bits (876), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 177/340 (52%), Positives = 244/340 (71%), Gaps = 31/340 (9%)

Query: 1    MVGFPFSCDEEIELYE-----------------------LENGDILCFQRSAHDSDTDCL 37
            M GF  + DEEIEL+E                       +E+GDI+C+Q+     +++  
Sbjct: 728  MAGF--APDEEIELFEEIKFEPCVMCEQIDKKTSFRLCQIEDGDIICYQKPLSIEESEFR 785

Query: 38   LPNIPSFLEHMHNRQVVCFRSLERPNDEGFYLELSKANGYDDIVKRLARHIGLDDPSKIR 97
             P++PSFLE++ NR++V FR+LE+P ++ F +ELSK + YDD+V+R+A  +GLDDPSK+R
Sbjct: 786  YPDVPSFLEYVQNRELVRFRTLEKPKEDEFTMELSKLHTYDDVVERVAEKLGLDDPSKLR 845

Query: 98   LTSHNCFSRQPNPDPIRYRGVKNLLDMLVNCNQTSVIMYYEVLDIPLPQLQDLKCLRVAF 157
            LTSHNC+S+QP P PI+YRGV +L DMLV+ NQTS I+YYEVLDIPLP+LQ LK L+VAF
Sbjct: 846  LTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAF 905

Query: 158  YYSTKNEVLSYLIRMPNHSTVMDMISQLKNKLQLSSPDANLKLLQVLDHKIYKTYSYDEK 217
            + +TK+EV+ + IR+P  STV D+I++LK K++LS  DA L+LL+V  HKIYK +   E+
Sbjct: 906  HSATKDEVIIHNIRLPKQSTVGDVINELKTKVELSHQDAELRLLEVFFHKIYKIFPSTER 965

Query: 218  IGDISSHH-TLRVVEIP-DEKSLGPSDILIPVSHFFRETGPKNHNQMKIKRFGEPFMLVI 275
            I +I+  + TLR  EIP +EK++GP+D LI V HF +E G    NQ +++ FGEPF LVI
Sbjct: 966  IENINDQYWTLRAEEIPEEEKNIGPNDRLIHVYHFTKEAG---QNQ-QVQNFGEPFFLVI 1021

Query: 276  HEGETLAKVKVKIQSKLHVPAKDFDKWKFAFLSLDDPNYL 315
            HEGETL ++K +IQ KLHVP +DF KWKFA  S+  P+YL
Sbjct: 1022 HEGETLEEIKTRIQKKLHVPDEDFAKWKFASFSMGRPDYL 1061


>AT5G06600.3 | Symbols: UBP12 | ubiquitin-specific protease 12 |
           chr5:2020682-2027834 REVERSE LENGTH=985
          Length = 985

 Score =  264 bits (674), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 134/256 (52%), Positives = 185/256 (72%), Gaps = 26/256 (10%)

Query: 1   MVGFPFSCDEEIELYE-----------------------LENGDILCFQRSAHDSDTDCL 37
           MVGF  + DEEIEL+E                       +E+GDI+CFQ+   + + +CL
Sbjct: 730 MVGF--APDEEIELFEEIKFEPCVMCEHLDKKTSFRLCQIEDGDIICFQKPLVNKEIECL 787

Query: 38  LPNIPSFLEHMHNRQVVCFRSLERPNDEGFYLELSKANGYDDIVKRLARHIGLDDPSKIR 97
            P +PSFLE++ NRQ+V FR+LE+P ++ F LELSK + YDD+V+++A  +GLDDPSK+R
Sbjct: 788 YPAVPSFLEYVQNRQLVRFRALEKPKEDEFVLELSKQHTYDDVVEKVAEKLGLDDPSKLR 847

Query: 98  LTSHNCFSRQPNPDPIRYRGVKNLLDMLVNCNQTSVIMYYEVLDIPLPQLQDLKCLRVAF 157
           LTSHNC+S+QP P PI+YRGV +L DMLV+ NQTS I+YYEVLDIPLP+LQ LK L+VAF
Sbjct: 848 LTSHNCYSQQPKPQPIKYRGVDHLSDMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAF 907

Query: 158 YYSTKNEVLSYLIRMPNHSTVMDMISQLKNKLQLSSPDANLKLLQVLDHKIYKTYSYDEK 217
           +++TK EV+ + IR+P  STV D+I++LK K++LS PDA L+LL+V  HKIYK +   E+
Sbjct: 908 HHATKEEVVIHNIRLPKQSTVGDVINELKTKVELSHPDAELRLLEVFYHKIYKIFPSTER 967

Query: 218 IGDISSHH-TLRVVEI 232
           I +I+  + TLR  E+
Sbjct: 968 IENINDQYWTLRAEEV 983