Miyakogusa Predicted Gene

Lj0g3v0261819.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0261819.1 Non Chatacterized Hit- tr|I1LLA9|I1LLA9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56234 PE,91.81,0,Class
II aaRS ABD-related,Anticodon-binding; no description,Brix domain; no
description,NULL; Brix,B,CUFF.17226.1
         (293 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G63780.1 | Symbols: IMP4 | Ribosomal RNA processing Brix doma...   461   e-130
AT4G01560.1 | Symbols: MEE49 | Ribosomal RNA processing Brix dom...   151   4e-37

>AT1G63780.1 | Symbols: IMP4 | Ribosomal RNA processing Brix domain
           protein | chr1:23665045-23667243 REVERSE LENGTH=294
          Length = 294

 Score =  461 bits (1187), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/294 (73%), Positives = 252/294 (85%), Gaps = 1/294 (0%)

Query: 1   MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALQEGKAIPTXXXXXXXXXXXXIDLE 60
           M RR +RL++EY+YRKSLEG ER +YE+KR IREALQEGK IPT            IDLE
Sbjct: 1   MQRRLVRLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTELRNVEAKLRQEIDLE 60

Query: 61  DENTAVPRTHIDDEYANAAEKDPKILLTTSRDPSAPLQQFVKELKFVFPNANRMNRGGQV 120
           D+NTAVPR+HIDDEYANA E DPKILLTTSR+PSAPL +F KELKFVFPN+ R+NRG QV
Sbjct: 61  DQNTAVPRSHIDDEYANATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQV 120

Query: 121 ISDIIETCRSHDYTDVILVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIKDRKAMG 180
           IS+IIET RSHD+TDVILVHEHRGVPDGLI+ HLPFGPTAYFGLLNVVTRH+I D+K++G
Sbjct: 121 ISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKSIG 180

Query: 181 TMPEAYPHVILENFSTKLGERTANILKHLFPVPKPDTKRIVTLANQSDYISFRHHIYEK- 239
            MPE YPH+I  NF+T++G+R  NILKH+FP PK D KRIVT +NQSDYISFR+H+Y+K 
Sbjct: 181 KMPEQYPHLIFNNFTTQMGQRVGNILKHIFPAPKLDAKRIVTFSNQSDYISFRNHVYDKG 240

Query: 240 PGGPKSIELKEIGPRFELRLYQIKLGTVDQAEAQTEWVIRPFMNTSKKRKFLSD 293
            GGPKSIELKEIGPRFELRLYQ+KLGTV+Q EA+ EWVIRP+MNTSKKRKF+ +
Sbjct: 241 EGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFIGE 294


>AT4G01560.1 | Symbols: MEE49 | Ribosomal RNA processing Brix domain
           protein | chr4:677266-679164 REVERSE LENGTH=343
          Length = 343

 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 16/221 (7%)

Query: 83  PKILLTTSRDPSAPLQQFVKELKFVFPNANRMNRGGQVISDIIETCRSHDYTDVILVHEH 142
           PK+LLTT R  S      + EL  V PN++   RG   +  I+E     D+T +I+VH +
Sbjct: 127 PKVLLTTCRFNSTRGPALISELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTN 186

Query: 143 RGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIKDRKAMGTMPEAYPHVILENFSTKLGERT 202
           R  PD L++  LP GPTA+F L N+V R +IK+    G      P ++L NF+T+LG R 
Sbjct: 187 RREPDALLIIGLPNGPTAHFKLSNLVLRKDIKNH---GNPTSHQPELVLNNFTTRLGNRV 243

Query: 203 ANILKHLFPVPKPD--TKRIVTLANQSDYISFRHHIY--------EKPGGPKSIE--LKE 250
               + LFP P P+   +R+VT  NQ D+I FRHH Y           G  ++I+  L+E
Sbjct: 244 GRFFQSLFP-PDPNFRGRRVVTFHNQRDFIFFRHHRYIFETKESKSDKGKEETIKPRLQE 302

Query: 251 IGPRFELRLYQIKLGTVDQAEAQTEWVIRPFMNTSKKRKFL 291
            GPRF L+L  ++ GT D    + EWV +P M+TS++R FL
Sbjct: 303 CGPRFTLKLVTLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 343