Miyakogusa Predicted Gene

Lj0g3v0261509.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0261509.1 Non Chatacterized Hit- tr|I3SGU5|I3SGU5_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,65.75,1e-18,seg,NULL; Tocopherol_cycl,Tocopherol
cyclase,CUFF.17203.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32770.1 | Symbols: VTE1, ATSDX1 | tocopherol cyclase, chloro...    90   3e-19

>AT4G32770.1 | Symbols: VTE1, ATSDX1 | tocopherol cyclase,
           chloroplast / vitamin E deficient 1 (VTE1) / sucrose
           export defective 1 (SXD1) | chr4:15804981-15807790
           FORWARD LENGTH=488
          Length = 488

 Score = 89.7 bits (221), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 48/54 (88%), Gaps = 1/54 (1%)

Query: 47  RLHVAPIAYSPTPPNRDLRTPHSGYHFDGSARKFFEGWYFKVSIPERRQSFCFI 100
           ++ V P+ Y PT PNR+LRTPHSGYHFDG+ RKFFEGWYF+VSIPE+R+SFCF+
Sbjct: 59  KISVKPV-YVPTSPNRELRTPHSGYHFDGTPRKFFEGWYFRVSIPEKRESFCFM 111