Miyakogusa Predicted Gene

Lj0g3v0260519.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0260519.1 Non Chatacterized Hit- tr|D8PLJ6|D8PLJ6_SCHCM
Putative uncharacterized protein OS=Schizophyllum
comm,32.18,9e-17,Mpv17_PMP22,Mpv17/PMP22; SUBFAMILY NOT NAMED,NULL;
PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 (MPV17),Mpv,CUFF.17176.1
         (219 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42770.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP...   284   3e-77
AT5G43140.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP...    73   2e-13
AT4G33905.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP...    67   9e-12
AT2G14860.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP...    57   1e-08
AT5G19750.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP...    55   4e-08
AT3G24570.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP...    53   1e-07

>AT2G42770.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
           family protein | chr2:17798635-17799927 REVERSE
           LENGTH=232
          Length = 232

 Score =  284 bits (727), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/184 (74%), Positives = 156/184 (84%), Gaps = 1/184 (0%)

Query: 37  GGGLRFPVQQAANAASLALTGDTIAQVTQRWRK-TKKEASSGTVSQDELWSNLSDHDWLR 95
            GG RFP++QA  A +L  TGDTIAQ++ RW+K T  + SS  + + ELW+  S+HDW+R
Sbjct: 49  AGGYRFPLKQAVTAGALTFTGDTIAQLSGRWKKRTALKQSSSELDEGELWNIFSEHDWIR 108

Query: 96  ALRMTSYGFLFYGPGSYAWYQCLDHFLGKPTVQNLMLKVLLNQVVLGPSVIAVIFAWNNL 155
           ALRM+SYGFL YGPGSYAWYQ LDH L KPT  NL+LKVLLNQV+LGPSVIAVIFAWNNL
Sbjct: 109 ALRMSSYGFLLYGPGSYAWYQFLDHSLPKPTATNLVLKVLLNQVILGPSVIAVIFAWNNL 168

Query: 156 WQQKLSELPEKYRRDALPTLLYGFRFWIPVSILNFWVVPLQARVAFMSMGSIFWNFYLSS 215
           W  KLSEL  KY++DALPTLLYGFRFW+PVSILNFWVVPLQARVAFMSMGS+FWNFYLSS
Sbjct: 169 WLGKLSELGNKYQKDALPTLLYGFRFWVPVSILNFWVVPLQARVAFMSMGSVFWNFYLSS 228

Query: 216 TMSK 219
           TMSK
Sbjct: 229 TMSK 232


>AT5G43140.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
           family protein | chr5:17321570-17323224 FORWARD
           LENGTH=254
          Length = 254

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 1/124 (0%)

Query: 92  DWLRALRMTSYGFLFYGPGSYAWYQCLDHFLGKPTVQNLMLKVLLNQVVLGPSVIAVIFA 151
           D +R  RM S+G +F GP  + W+  L   L K  V     K+++ QV+ GP    V ++
Sbjct: 121 DLIRTARMASFGLIFLGPSQHLWFSYLSKILPKRDVLTTFKKIMMGQVLFGPVSNTVFYS 180

Query: 152 WNNLWQ-QKLSELPEKYRRDALPTLLYGFRFWIPVSILNFWVVPLQARVAFMSMGSIFWN 210
           +N   Q +   E+  + +RD LPTL  G  +W     + F  VP+  +    S  +  W 
Sbjct: 181 YNAALQGENSEEIVARLKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQPLMNSSCAYIWT 240

Query: 211 FYLS 214
            YL+
Sbjct: 241 IYLT 244


>AT4G33905.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
           family protein | chr4:16254065-16255592 REVERSE
           LENGTH=261
          Length = 261

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 5/158 (3%)

Query: 63  VTQRWRKTKKEASSGTVSQDELWSNLSDHDWLRALRMTSYGFLFYGPGSYAWYQCLDHFL 122
           VT        + SS T+ Q    +++  +D +R  RM  YG L  GP  + W+  +    
Sbjct: 100 VTSSLIYIAADLSSQTIPQ----ASVDSYDLVRTARMGGYGLLILGPTLHYWFNLMSSLF 155

Query: 123 GKPTVQNLMLKVLLNQVVLGPSVIAVIFAWNNLWQ-QKLSELPEKYRRDALPTLLYGFRF 181
            K  +     K+ + Q V GP++  V F+ N   Q +  SE+  + +RD LPT+L G  +
Sbjct: 156 PKRDLITTFKKMAMGQTVYGPAMNVVFFSLNAALQGENGSEIVARLKRDLLPTMLNGVMY 215

Query: 182 WIPVSILNFWVVPLQARVAFMSMGSIFWNFYLSSTMSK 219
           W     + F   P+  +    +  S  W  Y++   S+
Sbjct: 216 WPLCDFITFKFCPVYLQPLVSNSFSYLWTIYITYMASR 253


>AT2G14860.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
           family protein | chr2:6387820-6389563 REVERSE LENGTH=252
          Length = 252

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 1/136 (0%)

Query: 80  SQDELWSNLSDHDWLRALRMTSYGFLFYGPGSYAWYQCLDHFLGKPTVQNLMLKVLLNQV 139
           SQ    ++   +D +R  RM  YG    GP  + W+  +     K  +     K+ + Q 
Sbjct: 104 SQTIAKTSSESYDLVRTARMGGYGLFVLGPTLHYWFNFMSRLFPKQDLITTFKKMAMGQT 163

Query: 140 VLGPSVIAVIFAWN-NLWQQKLSELPEKYRRDALPTLLYGFRFWIPVSILNFWVVPLQAR 198
           + GP +  + F+ N +L  ++ S +  + +RD LP L  G  +W     + F   P+  +
Sbjct: 164 IYGPIMTVIFFSLNASLQGERGSVILARLKRDLLPALFNGVMYWPLCDFITFRFFPVHLQ 223

Query: 199 VAFMSMGSIFWNFYLS 214
               +  S  W  Y++
Sbjct: 224 PLVSNSFSYVWTIYMT 239


>AT5G19750.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
           family protein | chr5:6677124-6679127 FORWARD LENGTH=288
          Length = 288

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 20/171 (11%)

Query: 44  VQQAANAASLALTGDTIAQVTQRWRKTKKEASSGTVSQDELWSNLSDHDWLRALRMTSYG 103
           + +A  AA L L GD I Q+T                     +  S  D  R L  T  G
Sbjct: 128 LTKAVTAALLNLVGDLICQLTI--------------------NKTSSLDKKRTLTFTFLG 167

Query: 104 FLFYGPGSYAWYQCLDHFLGKPTVQNLMLKVLLNQVVLGPSVIAVIFAWNNLWQQKLSEL 163
               GP  + WY  L   +    +   ++++LL+Q V  P  + V  +     + K S +
Sbjct: 168 LGLVGPTLHFWYLYLSKVVTASGLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGKPSNV 227

Query: 164 PEKYRRDALPTLLYGFRFWIPVSILNFWVVPLQARVAFMSMGSIFWNFYLS 214
             K +++    ++  ++ WIP   LNF  VP   +V   ++ ++ WN  LS
Sbjct: 228 IPKLQQEWTGAMIANWQLWIPFQFLNFRFVPQNYQVLASNVVALAWNVILS 278


>AT3G24570.1 | Symbols:  | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
           family protein | chr3:8966675-8968530 REVERSE LENGTH=235
          Length = 235

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 7/130 (5%)

Query: 92  DWLRALRMTSYGFLFYGPGSYAWYQCLDHFLG------KPTVQNLMLKVLLNQVVLGPSV 145
           +W R    + +GF F GP  + WY+ LD F+         + + +  KV ++ ++ GP  
Sbjct: 76  NWKRVAITSMFGFGFVGPVGHFWYEGLDKFIKLKLRYVPKSTRFVAAKVAMDGLIFGPVD 135

Query: 146 IAVIFAWNNLWQQK-LSELPEKYRRDALPTLLYGFRFWIPVSILNFWVVPLQARVAFMSM 204
           + V F +      K  +E+ E  +RD LP L      W  + I NF  VP+Q ++ ++++
Sbjct: 136 LLVFFTYMGFATGKNTAEVKEGLKRDFLPALALEGGAWPLLQIANFRYVPVQYQLLYVNI 195

Query: 205 GSIFWNFYLS 214
             +  + +LS
Sbjct: 196 FCLVDSAFLS 205