Miyakogusa Predicted Gene
- Lj0g3v0260289.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0260289.1 Non Chatacterized Hit- tr|C5Y314|C5Y314_SORBI
Putative uncharacterized protein Sb05g000690
OS=Sorghu,51.11,5e-18,Serinc,TMS membrane protein/tumour
differentially expressed protein; UNCHARACTERIZED,NULL; SERINE
IN,CUFF.17150.1
(113 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33205.1 | Symbols: | Serinc-domain containing serine and sp... 160 2e-40
AT4G13345.2 | Symbols: MEE55 | Serinc-domain containing serine a... 138 8e-34
AT4G13345.1 | Symbols: MEE55 | Serinc-domain containing serine a... 138 8e-34
AT3G24460.1 | Symbols: | Serinc-domain containing serine and sp... 135 5e-33
AT3G06170.1 | Symbols: | Serinc-domain containing serine and sp... 71 1e-13
AT1G16180.2 | Symbols: | Serinc-domain containing serine and sp... 69 7e-13
AT1G16180.1 | Symbols: | Serinc-domain containing serine and sp... 69 7e-13
>AT2G33205.1 | Symbols: | Serinc-domain containing serine and
sphingolipid biosynthesis protein |
chr2:14070987-14073211 REVERSE LENGTH=422
Length = 422
Score = 160 bits (404), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 70/97 (72%), Positives = 87/97 (89%)
Query: 1 MAAFSTGIDSKCFQFSKNKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKW 60
MA FSTGIDS+ F+F K++ + EDDIPY+YGFFH+VFSLGAMYFAMLFISW+L++S KW
Sbjct: 313 MATFSTGIDSESFRFRKDEAKEEDDIPYSYGFFHLVFSLGAMYFAMLFISWNLSHSTEKW 372
Query: 61 SIDVGWLSTWVKVINEWFAATIYIWILISPVVRQNKV 97
SIDVGW STWVK++NEWFAA IY+W LI+P+VRQ++V
Sbjct: 373 SIDVGWTSTWVKIVNEWFAAAIYLWKLIAPIVRQHRV 409
>AT4G13345.2 | Symbols: MEE55 | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr4:7767292-7769426
FORWARD LENGTH=394
Length = 394
Score = 138 bits (347), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 79/96 (82%)
Query: 1 MAAFSTGIDSKCFQFSKNKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKW 60
+A FSTG+DS+CFQF K++ ED IPY YGFFH VF+ GAMYFAML + W++++S +KW
Sbjct: 296 IATFSTGVDSQCFQFRKDENHEEDAIPYGYGFFHFVFATGAMYFAMLLVGWNIHHSMKKW 355
Query: 61 SIDVGWLSTWVKVINEWFAATIYIWILISPVVRQNK 96
+IDVGW STWV+++NEW A +YIW+L++P+V +++
Sbjct: 356 TIDVGWTSTWVRIVNEWLAVGVYIWMLVAPMVLKSR 391
>AT4G13345.1 | Symbols: MEE55 | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr4:7767292-7769426
FORWARD LENGTH=394
Length = 394
Score = 138 bits (347), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 79/96 (82%)
Query: 1 MAAFSTGIDSKCFQFSKNKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKW 60
+A FSTG+DS+CFQF K++ ED IPY YGFFH VF+ GAMYFAML + W++++S +KW
Sbjct: 296 IATFSTGVDSQCFQFRKDENHEEDAIPYGYGFFHFVFATGAMYFAMLLVGWNIHHSMKKW 355
Query: 61 SIDVGWLSTWVKVINEWFAATIYIWILISPVVRQNK 96
+IDVGW STWV+++NEW A +YIW+L++P+V +++
Sbjct: 356 TIDVGWTSTWVRIVNEWLAVGVYIWMLVAPMVLKSR 391
>AT3G24460.1 | Symbols: | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr3:8886160-8889717
REVERSE LENGTH=409
Length = 409
Score = 135 bits (340), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 79/100 (79%), Gaps = 4/100 (4%)
Query: 1 MAAFSTGIDSKCFQFSKNK----VEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNS 56
+A FSTGIDS+CFQF K++ E EDD+PY YGFFH VF+ GAMYFAML I W+ ++
Sbjct: 303 IATFSTGIDSQCFQFKKDENDQEEEAEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHP 362
Query: 57 ARKWSIDVGWLSTWVKVINEWFAATIYIWILISPVVRQNK 96
+KW+IDVGW STWV+V+NEW A +YIW+L++P++ +++
Sbjct: 363 MKKWTIDVGWTSTWVRVVNEWLAVCVYIWMLVAPLILKSR 402
>AT3G06170.1 | Symbols: | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr3:1867520-1869738
FORWARD LENGTH=409
Length = 409
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 17 KNKVEHEDDIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKWSIDVGWLSTWVKVINE 76
K+ + Y+Y FFH++F+L +MY AML W ++S IDVGW S WVK+
Sbjct: 328 KSGEAEARPVSYSYSFFHIIFALASMYAAMLLSGWT-DSSESATLIDVGWTSVWVKICTG 386
Query: 77 WFAATIYIWILISPVVRQNK 96
W A +YIW LI+P++ ++
Sbjct: 387 WVTAGLYIWTLIAPLILPDR 406
>AT1G16180.2 | Symbols: | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr1:5540905-5542670
FORWARD LENGTH=412
Length = 412
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 25 DIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKWSIDVGWLSTWVKVINEWFAATIYI 84
+ Y+Y FFH++FSL +MY AML W + +DVGW S WV+V+ W A ++I
Sbjct: 339 PVSYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRVVTSWATAGLFI 398
Query: 85 WILISPVVRQNK 96
W L++P++ ++
Sbjct: 399 WSLVAPILFPDR 410
>AT1G16180.1 | Symbols: | Serinc-domain containing serine and
sphingolipid biosynthesis protein | chr1:5540905-5542670
FORWARD LENGTH=412
Length = 412
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 25 DIPYNYGFFHMVFSLGAMYFAMLFISWDLNNSARKWSIDVGWLSTWVKVINEWFAATIYI 84
+ Y+Y FFH++FSL +MY AML W + +DVGW S WV+V+ W A ++I
Sbjct: 339 PVSYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRVVTSWATAGLFI 398
Query: 85 WILISPVVRQNK 96
W L++P++ ++
Sbjct: 399 WSLVAPILFPDR 410