Miyakogusa Predicted Gene

Lj0g3v0260169.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0260169.1 tr|F2CSR9|F2CSR9_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,43.94,1e-18,mTERF,Mitochodrial transcription termination
factor-related; CGI-12 PROTEIN-RELATED,NULL; seg,NULL; ,CUFF.17139.1
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18870.1 | Symbols:  | Mitochondrial transcription terminatio...   225   1e-59
AT2G03050.1 | Symbols: EMB93, SOLDAT10 | Mitochondrial transcrip...   138   2e-33
AT2G34620.1 | Symbols:  | Mitochondrial transcription terminatio...   117   6e-27
AT2G36000.1 | Symbols:  | Mitochondrial transcription terminatio...    97   8e-21
AT2G36000.2 | Symbols:  | Mitochondrial transcription terminatio...    97   8e-21
AT1G78930.1 | Symbols:  | Mitochondrial transcription terminatio...    79   2e-15
AT4G14605.1 | Symbols:  | Mitochondrial transcription terminatio...    70   8e-13
AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription ter...    67   6e-12
AT4G38160.1 | Symbols: pde191 | Mitochondrial transcription term...    59   2e-09
AT4G38160.2 | Symbols: pde191 | Mitochondrial transcription term...    59   2e-09
AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription term...    58   3e-09
AT5G55580.1 | Symbols:  | Mitochondrial transcription terminatio...    57   8e-09
AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active...    56   1e-08
AT2G44020.1 | Symbols:  | Mitochondrial transcription terminatio...    53   9e-08

>AT3G18870.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr3:6508515-6509339 REVERSE
           LENGTH=274
          Length = 274

 Score =  225 bits (573), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/157 (68%), Positives = 129/157 (82%), Gaps = 1/157 (0%)

Query: 22  QESRGLILRCPNLLFSDVNLCLRPTLQFLREVGVCGLNRPTNRNAHLLNTRVGKLRVKVR 81
           +ESRGLI+ CPN+LFSDV  CLRPTL +L+E+GV  LNR +  NAH+LNTRV KLR K+R
Sbjct: 118 EESRGLIVNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEKLRAKMR 177

Query: 82  FLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFS 141
           FL+  +G  +EEA  VC R+PAIFGY VE+NL PKF FLV +MER+LEELKKFPQYF FS
Sbjct: 178 FLK-SIGFEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFS 236

Query: 142 LEKRIVPRHFHLKERGVRIPLNRMLMWGDDKFYAKWK 178
           L KRI PRH+HLK++ VR+ L+RMLMWGD KFY+KWK
Sbjct: 237 LGKRIRPRHWHLKKKNVRVSLSRMLMWGDQKFYSKWK 273


>AT2G03050.1 | Symbols: EMB93, SOLDAT10 | Mitochondrial
           transcription termination factor family protein |
           chr2:900094-900945 REVERSE LENGTH=283
          Length = 283

 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 95/147 (64%), Gaps = 1/147 (0%)

Query: 28  ILRCPNLLFSDVNLCLRPTLQFLREVGVCGLNRPTNRNAHLLNTRVGKLRV-KVRFLEED 86
           I RCP LL S V+  LRP L FL+ +G  G +  T+RN  LL + V +  + K+ +LEE 
Sbjct: 122 ISRCPRLLISSVDYQLRPALTFLKTLGFVGRDTITSRNTVLLVSNVERTLIPKIEYLEEG 181

Query: 87  VGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLEKRI 146
           +G + EE   +  R PA+  Y V+NNL PK  F +EEM  D++ELK+FPQYF FSLE++I
Sbjct: 182 LGFTREEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKI 241

Query: 147 VPRHFHLKERGVRIPLNRMLMWGDDKF 173
            PRH  LKE G+ +PL+ ML   D +F
Sbjct: 242 KPRHRLLKEHGILMPLSEMLKVSDGQF 268


>AT2G34620.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr2:14577196-14578203 FORWARD
           LENGTH=303
          Length = 303

 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 92/150 (61%), Gaps = 2/150 (1%)

Query: 25  RGLILRCPNLLFSDVNLCLRPTLQFLREVGVCGLNRPTNRNAHLLNTRV-GKLRVKVRFL 83
           R +I +CP LL S V   L+P L +L+ +G+  L     ++  LL + V   L  K+RFL
Sbjct: 142 RRVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRFL 201

Query: 84  EEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLE 143
           E  +G S  EA+ +  R PA+F + +ENN  PK  + + E++  LE LK+FPQYF FSLE
Sbjct: 202 E-SIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLE 260

Query: 144 KRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
           KRI PRH    ERG+ +PL+ ML   D++F
Sbjct: 261 KRIKPRHLESMERGLELPLSLMLKSTDEEF 290


>AT2G36000.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr2:15117181-15118182 FORWARD
           LENGTH=333
          Length = 333

 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 6/150 (4%)

Query: 25  RGLILRCPNLLFSDVNLCLRPTLQFLREVGVCGLNRPTNRNAHLLNTRV-GKLRVKVRFL 83
           R  + R P LL   V+  LRPTL FL+ +G+       +++ +LL+  V  KL  ++ + 
Sbjct: 163 RQALRRRPRLLACSVDHQLRPTLYFLQRIGILD----PHKHTYLLSCSVDNKLVPRIDYF 218

Query: 84  EEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLE 143
           E+ +G S   A  +  R P +F Y +  N  PK  +L+ EM RD+ E+ +FPQYF FSLE
Sbjct: 219 EK-LGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLE 277

Query: 144 KRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
            RI PRH     +GVR PL  ML   +  F
Sbjct: 278 NRIKPRHEACAAKGVRFPLPVMLKTNEAGF 307


>AT2G36000.2 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr2:15117181-15118333 FORWARD
           LENGTH=318
          Length = 318

 Score = 96.7 bits (239), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 6/150 (4%)

Query: 25  RGLILRCPNLLFSDVNLCLRPTLQFLREVGVCGLNRPTNRNAHLLNTRV-GKLRVKVRFL 83
           R  + R P LL   V+  LRPTL FL+ +G+       +++ +LL+  V  KL  ++ + 
Sbjct: 163 RQALRRRPRLLACSVDHQLRPTLYFLQRIGILD----PHKHTYLLSCSVDNKLVPRIDYF 218

Query: 84  EEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLE 143
           E+ +G S   A  +  R P +F Y +  N  PK  +L+ EM RD+ E+ +FPQYF FSLE
Sbjct: 219 EK-LGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLE 277

Query: 144 KRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
            RI PRH     +GVR PL  ML   +  F
Sbjct: 278 NRIKPRHEACAAKGVRFPLPVMLKTNEAGF 307


>AT1G78930.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr1:29678285-29680648 REVERSE
           LENGTH=591
          Length = 591

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 4/154 (2%)

Query: 27  LILRCPNLLFSDVNLCLRPTLQFLREVGVCGLNRP--TNRNAHLLNTRVGKLRV-KVRFL 83
           ++ RCP +    +   L+  L FL   GV   + P    +    L     K  + ++++L
Sbjct: 426 ILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYL 485

Query: 84  EEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLE 143
            E +G+S  E   +  +   I GY ++  L PKF FLV  ME+ + E+ ++P+YF +SLE
Sbjct: 486 ME-IGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLE 544

Query: 144 KRIVPRHFHLKERGVRIPLNRMLMWGDDKFYAKW 177
           KRI PR   LK R +   L  ML   D++F A +
Sbjct: 545 KRIKPRFRVLKGRNIECTLQEMLGKNDEEFAADF 578


>AT4G14605.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr4:8378815-8380564 FORWARD
           LENGTH=493
          Length = 493

 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 9/156 (5%)

Query: 22  QESRGLIL-RCPNLLFSDVNLCLRPTLQFLREVGV---CGLNRPTNRNAHLLNTRVGKLR 77
           +E  G IL RCPN++   V   LRPT+++ R + V     L+R        + + +    
Sbjct: 317 EEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLSIESNLKP-- 374

Query: 78  VKVRFLEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQY 137
           V   FLE+  GL  +E   + +R  A++ + ++ N+ PK+ +  + M+    EL KFPQ+
Sbjct: 375 VTEFFLEKGFGL--DEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQF 431

Query: 138 FGFSLEKRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
           FG+SL++RI PR+  ++  GVR+ LN++L     +F
Sbjct: 432 FGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEF 467


>AT2G21710.1 | Symbols: EMB2219 | Mitochondrial transcription
           termination factor family protein | chr2:9270886-9273307
           FORWARD LENGTH=641
          Length = 641

 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 83/151 (54%), Gaps = 6/151 (3%)

Query: 27  LILRCPNLLFSDVNLCLRPTLQFL-REVGVC--GLNRPTNRNAHLLNTRVG-KLRVKVRF 82
           ++++ P+LL + +   +RP + FL    GV    + +    +  LL   +G KL   +R+
Sbjct: 444 MLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRY 503

Query: 83  LEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSL 142
               +G+ + +   + A  P +  Y+V+N L PK+ +L   M R L++L +FP++F +SL
Sbjct: 504 YIS-LGIRFYQLGEMIADFPMLLRYNVDN-LRPKYRYLRRTMIRPLQDLIEFPRFFSYSL 561

Query: 143 EKRIVPRHFHLKERGVRIPLNRMLMWGDDKF 173
           E+RI+PRH  + E  V   L  ML   D++F
Sbjct: 562 ERRIIPRHTIMVENRVNFKLRYMLACTDEEF 592


>AT4G38160.1 | Symbols: pde191 | Mitochondrial transcription
           termination factor family protein |
           chr4:17902412-17903413 FORWARD LENGTH=333
          Length = 333

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 27  LILRCPNLLFSDVNLCLRPTLQFLRE-VGVC--GLNRPTNRNAHLLNTRVGK-LRVKVRF 82
           ++++ P L+   V+  LRPT +FL+  VG+   G+         LL   V K L+    +
Sbjct: 171 VLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDY 230

Query: 83  LEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSL 142
           L+E  G    +   +    P I    V+N+L P+  FLV+ M R ++E+  +P++F   L
Sbjct: 231 LKE-CGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGL 289

Query: 143 EKRIVPRHFHLKERGVRIPLNRMLMWGDDKFYAKW 177
           +K++  R   +K+  +   L  ML     KF+ K+
Sbjct: 290 KKKVESRFKLVKKNNIDCSLREMLDCNTKKFHEKF 324


>AT4G38160.2 | Symbols: pde191 | Mitochondrial transcription
           termination factor family protein |
           chr4:17902412-17903784 FORWARD LENGTH=363
          Length = 363

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 27  LILRCPNLLFSDVNLCLRPTLQFLRE-VGVC--GLNRPTNRNAHLLNTRVGK-LRVKVRF 82
           ++++ P L+   V+  LRPT +FL+  VG+   G+         LL   V K L+    +
Sbjct: 171 VLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDY 230

Query: 83  LEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSL 142
           L+E  G    +   +    P I    V+N+L P+  FLV+ M R ++E+  +P++F   L
Sbjct: 231 LKE-CGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGL 289

Query: 143 EKRIVPRHFHLKERGVRIPLNRMLMWGDDKFYAKW 177
           +K++  R   +K+  +   L  ML     KF+ K+
Sbjct: 290 KKKVESRFKLVKKNNIDCSLREMLDCNTKKFHEKF 324


>AT4G38160.3 | Symbols: pde191 | Mitochondrial transcription
           termination factor family protein |
           chr4:17902412-17903904 FORWARD LENGTH=378
          Length = 378

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 5/155 (3%)

Query: 27  LILRCPNLLFSDVNLCLRPTLQFLRE-VGVC--GLNRPTNRNAHLLNTRVGK-LRVKVRF 82
           ++++ P L+   V+  LRPT +FL+  VG+   G+         LL   V K L+    +
Sbjct: 171 VLVKNPFLMGYSVDKRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDY 230

Query: 83  LEEDVGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSL 142
           L+E  G    +   +    P I    V+N+L P+  FLV+ M R ++E+  +P++F   L
Sbjct: 231 LKE-CGFGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGL 289

Query: 143 EKRIVPRHFHLKERGVRIPLNRMLMWGDDKFYAKW 177
           +K++  R   +K+  +   L  ML     KF+ K+
Sbjct: 290 KKKVESRFKLVKKNNIDCSLREMLDCNTKKFHEKF 324


>AT5G55580.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr5:22515601-22517408 FORWARD
           LENGTH=496
          Length = 496

 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 39/155 (25%)

Query: 27  LILRCPNLLFSDVNLCLRPTLQFLREVGVCGLNRPTNRNAHLLNTRVGKLRVKVRFLEED 86
           ++ + P LL   ++    P + FLR +G+C        N+ +L                 
Sbjct: 349 MVKKHPQLLHYSIDDGFLPRINFLRSIGMC--------NSDILK---------------- 384

Query: 87  VGLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLEKRI 146
                     V   L  +    +E+NL PK+ +LV E+  ++  L K+P Y   SL++RI
Sbjct: 385 ----------VLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRI 434

Query: 147 VPRHFHLKE-RGVR---IPLNRMLMWGDDKFYAKW 177
            PRH  L E + VR    PL+  L+  D+ F  +W
Sbjct: 435 RPRHRFLVELKKVRKGPFPLSS-LVPNDESFCQQW 468


>AT5G54180.1 | Symbols: PTAC15 | plastid transcriptionally active 15
           | chr5:21988544-21990183 FORWARD LENGTH=500
          Length = 500

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 88  GLSYEEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLEKRIV 147
           GLS+E+ + +  + P +  Y+   +L  K  +L+E M R++EEL  FP + G+ L+ RI 
Sbjct: 403 GLSFEDILAMSTKHPQVLQYNY-TSLEEKLEYLIEYMGREVEELLAFPAFLGYKLDSRIK 461

Query: 148 PRHFH-LKERGVRIPLNRMLMWGDDKF 173
            R+   LK RG  + LN++L    ++F
Sbjct: 462 HRYEEKLKSRGENMSLNKLLTVSAERF 488


>AT2G44020.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr2:18217737-18219260 REVERSE
           LENGTH=507
          Length = 507

 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 92  EEAVNVCARLPAIFGYDVENNLWPKFAFLVEEMERDLEELKKFPQYFGFSLEKRIVPRHF 151
           E+   +  R P I    VE  +   + F   EM R ++EL ++P+YF +SLE RI PR+ 
Sbjct: 375 EDIAKMVVRCPQILCSRVEL-MKNSYYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQ 433

Query: 152 HLKERGVRIPLNRMLMWGDDKF 173
            L+ +G+R  LN  L   D +F
Sbjct: 434 KLQSKGIRSSLNWFLNCSDQRF 455