Miyakogusa Predicted Gene

Lj0g3v0260059.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0260059.1 tr|A9RVJ3|A9RVJ3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_119940,36.7,0.00000000000001,UNCHARACTERIZED,NULL,
CUFF.17140.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G57890.1 | Symbols:  | Tubulin binding cofactor C domain-cont...   180   2e-46
AT3G57890.2 | Symbols:  | Tubulin binding cofactor C domain-cont...   179   2e-46
AT2G42230.2 | Symbols:  | C-CAP/cofactor C-like domain-containin...   167   2e-42
AT2G42230.1 | Symbols:  | C-CAP/cofactor C-like domain-containin...   137   2e-33

>AT3G57890.1 | Symbols:  | Tubulin binding cofactor C
           domain-containing protein | chr3:21438271-21441695
           FORWARD LENGTH=573
          Length = 573

 Score =  180 bits (456), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 94/115 (81%)

Query: 2   LDPHDSLSHSAGVSDVQAESATQLDPDQFTNFVIPDWIAGDSTVTAKNNPFTLPDVYVAS 61
           +DPHDSLSH AGV+D QAESA  +DPDQF NF+IP+W +G    + K+NPF LPD Y+A+
Sbjct: 459 VDPHDSLSHPAGVADAQAESAASVDPDQFVNFLIPNWFSGAELGSTKDNPFPLPDAYMAA 518

Query: 62  QHRNQKNLGEIRKLLQEASLEESRKREFSSALHVYFKDWLYASGNIRQLYCLQGD 116
           Q RN KN  E R+ L+EA LEE+RKRE SSALHVYFKDWLYASGNIRQLYCLQGD
Sbjct: 519 QQRNLKNFEETRRSLKEAPLEENRKRELSSALHVYFKDWLYASGNIRQLYCLQGD 573


>AT3G57890.2 | Symbols:  | Tubulin binding cofactor C
           domain-containing protein | chr3:21438271-21441695
           FORWARD LENGTH=609
          Length = 609

 Score =  179 bits (455), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 94/115 (81%)

Query: 2   LDPHDSLSHSAGVSDVQAESATQLDPDQFTNFVIPDWIAGDSTVTAKNNPFTLPDVYVAS 61
           +DPHDSLSH AGV+D QAESA  +DPDQF NF+IP+W +G    + K+NPF LPD Y+A+
Sbjct: 495 VDPHDSLSHPAGVADAQAESAASVDPDQFVNFLIPNWFSGAELGSTKDNPFPLPDAYMAA 554

Query: 62  QHRNQKNLGEIRKLLQEASLEESRKREFSSALHVYFKDWLYASGNIRQLYCLQGD 116
           Q RN KN  E R+ L+EA LEE+RKRE SSALHVYFKDWLYASGNIRQLYCLQGD
Sbjct: 555 QQRNLKNFEETRRSLKEAPLEENRKRELSSALHVYFKDWLYASGNIRQLYCLQGD 609


>AT2G42230.2 | Symbols:  | C-CAP/cofactor C-like domain-containing
           protein | chr2:17593705-17596563 REVERSE LENGTH=568
          Length = 568

 Score =  167 bits (422), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 74/115 (64%), Positives = 90/115 (78%)

Query: 2   LDPHDSLSHSAGVSDVQAESATQLDPDQFTNFVIPDWIAGDSTVTAKNNPFTLPDVYVAS 61
           +DPHDSLSH  G SD QAE A+ +DPDQFT F+IP+W AG++  + K+NPF LPD Y A 
Sbjct: 454 IDPHDSLSHPTGASDKQAEPASCVDPDQFTTFLIPNWFAGEAIGSTKDNPFPLPDAYKAV 513

Query: 62  QHRNQKNLGEIRKLLQEASLEESRKREFSSALHVYFKDWLYASGNIRQLYCLQGD 116
           Q  N KNL E R+ L+E  LEE+RKRE ++A H+YFKDWLYA+GNIRQLYCLQGD
Sbjct: 514 QQTNLKNLEETRQSLRETPLEENRKRELTTAFHMYFKDWLYATGNIRQLYCLQGD 568


>AT2G42230.1 | Symbols:  | C-CAP/cofactor C-like domain-containing
           protein | chr2:17593807-17596563 REVERSE LENGTH=562
          Length = 562

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 77/103 (74%)

Query: 2   LDPHDSLSHSAGVSDVQAESATQLDPDQFTNFVIPDWIAGDSTVTAKNNPFTLPDVYVAS 61
           +DPHDSLSH  G SD QAE A+ +DPDQFT F+IP+W AG++  + K+NPF LPD Y A 
Sbjct: 454 IDPHDSLSHPTGASDKQAEPASCVDPDQFTTFLIPNWFAGEAIGSTKDNPFPLPDAYKAV 513

Query: 62  QHRNQKNLGEIRKLLQEASLEESRKREFSSALHVYFKDWLYAS 104
           Q  N KNL E R+ L+E  LEE+RKRE ++A H+YFKDWLY +
Sbjct: 514 QQTNLKNLEETRQSLRETPLEENRKRELTTAFHMYFKDWLYGN 556