Miyakogusa Predicted Gene

Lj0g3v0259629.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259629.1 tr|G7L4H1|G7L4H1_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_7g061010 PE=4 SV=1,43.86,2.3,A Receptor for
Ubiquitination Targets,F-box domain, cyclin-like; F-box domain,F-box
domain, cyclin-l,CUFF.17101.1
         (405 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23880.1 | Symbols:  | F-box and associated interaction domai...    92   9e-19
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ...    73   3e-13
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ...    73   3e-13
AT1G33530.1 | Symbols:  | F-box family protein | chr1:12159884-1...    62   8e-10
AT4G22390.1 | Symbols:  | F-box associated ubiquitination effect...    56   6e-08

>AT3G23880.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:8622061-8623155
           REVERSE LENGTH=364
          Length = 364

 Score = 91.7 bits (226), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 131/301 (43%), Gaps = 39/301 (12%)

Query: 54  LPVKSLMRFKSVSKSWKSLMSDSQLV---KLLLHRSFCRMNADFSHVRFVTE------CD 104
           LPVKSL RFK V  SW+SL+S++       L+L  S    +    +    T       C 
Sbjct: 26  LPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITTSRYHLKSCC 85

Query: 105 IHN--SGSSSYVSPRSMTSLLERADTEAESADISGYRLIGVCNGLICLKSTKFRRKYCYH 162
           IH+  + S+ YVS           D E    D   Y+++G C+GL+C      +  Y ++
Sbjct: 86  IHSLYNASTVYVSEH---------DGELLGRDY--YQVVGTCHGLVCFHVDYDKSLYLWN 134

Query: 163 -TVYFWNXXXXXXXXXXXXXXFGDFGFGYDSSTDTYKVVHVYPEQTALHV----YNMGDN 217
            T+                     +GFGYD S D YKVV +  ++  + +    Y+    
Sbjct: 135 PTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQK 194

Query: 218 CWRTIHLFPAPNWILRLPSYSYSVSNTINWLGEMFSENDTDLIDCCYKIVSFDLGKPKYT 277
            WR+   FP+   +         ++ T+NW     S +        + I+S+D+ + ++ 
Sbjct: 195 LWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSS--------WTIISYDMSRDEFK 246

Query: 278 QLALPFCYGEEDIDNYFKPILGVLRGCLCISENNKTRNFALWQMKEFGVHQSWTKLFSIN 337
           +L  P C G       F   LG LRGCL +    K  N  +W MKEFG   SW+KL SI 
Sbjct: 247 ELPGPVCCGR----GCFTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIP 302

Query: 338 G 338
           G
Sbjct: 303 G 303


>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 148/374 (39%), Gaps = 46/374 (12%)

Query: 54  LPVKSLMRFKSVSKSWKSLMSDSQLVKLLLHRSFCRMNADFSHVRFVTECDIHNSGSSSY 113
           LP K+L+R +++SK    L++D   ++  LHR       D   +       +++      
Sbjct: 16  LPAKTLVRCRALSKPCYHLINDPDFIESHLHRVL--QTGDHLMILLRGALRLYSV----- 68

Query: 114 VSPRSMTSLLERADTEAESADISGYRLIGVCNGLICLKSTKFRRKY---CYHTVYFWNXX 170
                + SL   +D E          + G  NGLI L ++             ++     
Sbjct: 69  ----DLDSLDSVSDVEHPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPS 124

Query: 171 XXXXXXXXXXXXFGDFGFGYDSSTDTYKVVHV--------------YPEQTALHVYNMGD 216
                       +  +G GYDS +D YKVV +              +P +  + V+++  
Sbjct: 125 SIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYE--VKVFSLKK 182

Query: 217 NCWRTIH--------LFPAPNWILRLPSYSYSVSNTINWLGEMFSENDTDLIDCCYKIVS 268
           N W+ I         LF     +L    Y     N+++W+          LI     IV 
Sbjct: 183 NSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWV----LPRRPGLI-AFNLIVR 237

Query: 269 FDLGKPKYTQLALPFCYGEEDIDNYFKPILGVLRGCLCISENNKTRNFALWQMKEFGVHQ 328
           FDL   ++  +  P      ++D   +  +GVL GCLC+  N       +W MKE+ V  
Sbjct: 238 FDLALEEFEIVRFPEAVANGNVD--IQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRD 295

Query: 329 SWTKLFSINGSEKILAWPCFAISVFD-NGDALLLSVSRANGVLYTLRDSKLERKKIADEV 387
           SWTK+F++   + + ++      V+  +   +LL ++    V + L   K+   +I D  
Sbjct: 296 SWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCP 355

Query: 388 RFYYAENYIESLVL 401
             Y AE  + SLVL
Sbjct: 356 SSYSAELVVSSLVL 369


>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 148/374 (39%), Gaps = 46/374 (12%)

Query: 54  LPVKSLMRFKSVSKSWKSLMSDSQLVKLLLHRSFCRMNADFSHVRFVTECDIHNSGSSSY 113
           LP K+L+R +++SK    L++D   ++  LHR       D   +       +++      
Sbjct: 16  LPAKTLVRCRALSKPCYHLINDPDFIESHLHRVL--QTGDHLMILLRGALRLYSV----- 68

Query: 114 VSPRSMTSLLERADTEAESADISGYRLIGVCNGLICLKSTKFRRKY---CYHTVYFWNXX 170
                + SL   +D E          + G  NGLI L ++             ++     
Sbjct: 69  ----DLDSLDSVSDVEHPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPS 124

Query: 171 XXXXXXXXXXXXFGDFGFGYDSSTDTYKVVHV--------------YPEQTALHVYNMGD 216
                       +  +G GYDS +D YKVV +              +P +  + V+++  
Sbjct: 125 SIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYE--VKVFSLKK 182

Query: 217 NCWRTIH--------LFPAPNWILRLPSYSYSVSNTINWLGEMFSENDTDLIDCCYKIVS 268
           N W+ I         LF     +L    Y     N+++W+          LI     IV 
Sbjct: 183 NSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWV----LPRRPGLI-AFNLIVR 237

Query: 269 FDLGKPKYTQLALPFCYGEEDIDNYFKPILGVLRGCLCISENNKTRNFALWQMKEFGVHQ 328
           FDL   ++  +  P      ++D   +  +GVL GCLC+  N       +W MKE+ V  
Sbjct: 238 FDLALEEFEIVRFPEAVANGNVD--IQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRD 295

Query: 329 SWTKLFSINGSEKILAWPCFAISVFD-NGDALLLSVSRANGVLYTLRDSKLERKKIADEV 387
           SWTK+F++   + + ++      V+  +   +LL ++    V + L   K+   +I D  
Sbjct: 296 SWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIKDCP 355

Query: 388 RFYYAENYIESLVL 401
             Y AE  + SLVL
Sbjct: 356 SSYSAELVVSSLVL 369


>AT1G33530.1 | Symbols:  | F-box family protein |
           chr1:12159884-12161314 FORWARD LENGTH=441
          Length = 441

 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 118/287 (41%), Gaps = 37/287 (12%)

Query: 54  LPVKSLMRFKSVSKSWKSLMSDSQLVKLLLHRSFCRMNADFSHVRFVTECDIHNSGSSSY 113
           LPVK L+R KS+SK WKSL+    L +   H            ++   E     S    +
Sbjct: 109 LPVKYLVRLKSISKGWKSLIESDHLAE--KHLRLLEKKYGLKEIKITVERSTSKSICIKF 166

Query: 114 VSPRSMTSLLERADTEAESADISGYRLIGVCNGLICLKSTKFRRKYCYHTVYFWNXXXXX 173
            S RS  + +      ++S D+   R+ G CNGL+C+        Y   +VY +      
Sbjct: 167 FSRRSGMNAI-----NSDSDDL--LRVPGSCNGLVCV--------YELDSVYIYLLNPMT 211

Query: 174 XXXXXXXXXFG---DFGFGYDSSTDTYKVVHVYP-EQTALHVYNMGDNCWRTIHLFPAPN 229
                     G     GFG D  T TYKV+ +Y  ++    V+++  N WR  +    P 
Sbjct: 212 GVTRTLTPPRGTKLSVGFGIDVVTGTYKVMVLYGFDRVGTVVFDLDTNKWRQRYKTAGPM 271

Query: 230 WILRLPSYSYS---VSNTINW-LGEMFSENDTDLIDCCYKIVSFDLGKPKYTQLALPFCY 285
            +  +P+   +   V+ ++ W L   FSE           I+  DL   K+  L+ P   
Sbjct: 272 PLSCIPTPERNPVFVNGSLFWLLASDFSE-----------ILVMDLHTEKFRTLSQPNDM 320

Query: 286 GEEDIDNYFKPILGVLRGCLCISENNKTRNFALWQMKEFGVHQSWTK 332
            + D+ + +   +  L   LC+S   +  +  +W + +  + + W +
Sbjct: 321 DDVDVSSGYI-YMWSLEDRLCVSNVRQGLHSYVWVLVQDELSEKWER 366


>AT4G22390.1 | Symbols:  | F-box associated ubiquitination effector
           family protein | chr4:11813757-11815074 REVERSE
           LENGTH=402
          Length = 402

 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 31/177 (17%)

Query: 186 FGFGYDSSTDTYKVVHV-----------YPEQTALHVYNMGDNCWRTIHLFPAPN--WI- 231
           +G GYDS  D +KVV +           +P    + V+++  N W+ + L       WI 
Sbjct: 140 YGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQILWIS 199

Query: 232 -----LRLPSYSYSVSNTINWLGEMFSENDTDLIDCCYKIVSFDLGKPKYTQLALPF-CY 285
                L    Y   V+N ++W+           +     I+ +DL       L+ P   Y
Sbjct: 200 YYYHLLPRRGYGVVVNNHLHWILPRRQG-----VIAFNAIIKYDLASDDIGVLSFPQELY 254

Query: 286 GEEDIDNYFKPILGVLRGCLCISENNKTRNFALWQMKEFGVHQSWTKLFSINGSEKI 342
            E+++D      +GVL GC+C+   ++  +  +W +KE+  ++SWTKL+ +   E +
Sbjct: 255 IEDNMD------IGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPESV 305