Miyakogusa Predicted Gene

Lj0g3v0259479.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259479.1 tr|G7LES7|G7LES7_MEDTR Tubby-like F-box protein
OS=Medicago truncatula GN=MTR_8g077680 PE=4 SV=1,82.6,0,TGF BETA
RECEPTOR ASSOCIATED PROTEIN RELATED,NULL; CNH DOMAIN CONTAINING,NULL;
seg,NULL; Vps39_1,Vac,CUFF.17092.1
         (636 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36630.1 | Symbols: EMB2754 | Vacuolar sorting protein 39 | c...   766   0.0  

>AT4G36630.1 | Symbols: EMB2754 | Vacuolar sorting protein 39 |
           chr4:17272088-17276524 REVERSE LENGTH=1000
          Length = 1000

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/600 (63%), Positives = 469/600 (78%), Gaps = 5/600 (0%)

Query: 1   MCWCGENVCLGIRKEYMILNATNGALSEVFTSGRIAPPLVVSLPYGELLLGKENIGVIVD 60
           + WCGEN+CLGI+KEY+ILN  NG LSEVF SGR+APPLV+SLP GEL+LGKENIGV VD
Sbjct: 158 ISWCGENICLGIKKEYVILNTANGTLSEVFPSGRVAPPLVISLPSGELILGKENIGVFVD 217

Query: 61  QNGKLRPEGRICWSEAPAEVVIPKPYAIALLPRFVEIRSLRAPYPLIQTIVLRNVRHIRQ 120
           QNGKL    RICWSEAP  +VI  PYAIALLPR VE+R LR+PYPLIQTIVL+N+R + +
Sbjct: 218 QNGKLLQTERICWSEAPTSIVIQNPYAIALLPRRVEVRLLRSPYPLIQTIVLQNIRRLVK 277

Query: 121 SNNSVILVLENSVHGLFPVPLGVQIVQLTAAGNFEEALSLCKLLPPEDSNLRAAKEGSIH 180
           SNN+VI+ L+NSV+ LFPV +G QIVQLTA+GNFEEAL+LCK+LPP++S+LRAAKE SIH
Sbjct: 278 SNNAVIVGLDNSVYVLFPVSIGAQIVQLTASGNFEEALALCKVLPPDESSLRAAKESSIH 337

Query: 181 IRYAHHLFDNCSYEEAMEHFLESQVDITYVLSLYPSIILPKTTIVHEPEKFMDIFEDALC 240
            R+AH+LF+N SYEEAMEHFL SQVDIT+VLS+YPSIILPKTTI+ +P+K +DI  D   
Sbjct: 338 TRFAHYLFENGSYEEAMEHFLASQVDITHVLSMYPSIILPKTTIIPQPDKMVDISGDEAS 397

Query: 241 LSRGSSTMSDDMEPSPASHISESDENAELESKKMSHNMLMALIKFLHKKRYSVIEKATAE 300
           LSRGSS +SDDME S   +  ES++NA+LESKKMSHN LMALIK+L K+R +VIEKAT+E
Sbjct: 398 LSRGSSGISDDMESSSPRYFLESEDNADLESKKMSHNTLMALIKYLLKRRPAVIEKATSE 457

Query: 301 GTEEVVLDAVGDNFASYNSSRHKKITKGRGSTSISSVAREMASVXXXXXXXXXXXXXXXX 360
           GTEEV+ DAVG  + + +SS+ KK +KGRG   ++S AREMA++                
Sbjct: 458 GTEEVISDAVGKTYGANDSSKSKKSSKGRGMIPLNSGAREMAAILDTALLQALLHTGQSG 517

Query: 361 XAEDLLGDLNYCDLKICEEILKEGGYLVALVELYKCNSMHREALELVHKLVKD-----GQ 415
            A +LL  +NY D+KICEEIL +     AL+EL+K NSMH EAL+L+++L  +      Q
Sbjct: 518 AAIELLKGVNYSDVKICEEILMKSKNYSALLELFKSNSMHHEALKLLNQLADESKTNQSQ 577

Query: 416 SEIAHKFKPETIIEYLKPLCETDPTXXXXXXXXXXXXNPTQTIELFLSGNIPAHMVNSYL 475
           +++   F PE IIEYLKPLC TDP              PTQTI+LFLSGNI A +VNSYL
Sbjct: 578 TDVTQIFSPELIIEYLKPLCRTDPMLVLEYSMLVLESCPTQTIDLFLSGNISADLVNSYL 637

Query: 476 KQHAPNLQATYLELMLAMNEDAVSGNLQNEMVQVYLSEVLDWQADLSSQGKWDEKVYSPK 535
           KQHAPN+Q  YLELM+AMN+ AVSGNLQNEMVQ+YLSEVLD  A  S+Q KWDEK + P+
Sbjct: 638 KQHAPNMQGRYLELMMAMNDTAVSGNLQNEMVQIYLSEVLDLYAAKSAQQKWDEKDHPPE 697

Query: 536 RNKLLSALESMSGYNPEALLKRLPSDALYEERAILLGKMNQHELTLSLYVHKIYQVNIIL 595
           R KLLSALES+SGY+P+ LLKRLP DALYEERA++LGKMNQHEL LS+YVHK++  ++ L
Sbjct: 698 RKKLLSALESISGYSPQPLLKRLPRDALYEERAVILGKMNQHELALSIYVHKLHAPDLAL 757