Miyakogusa Predicted Gene

Lj0g3v0259369.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259369.1 Non Chatacterized Hit- tr|K4B077|K4B077_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,27.27,0.000000000000006,seg,NULL; coiled-coil,NULL,CUFF.17084.1
         (321 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50350.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   135   3e-32

>AT5G50350.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: response to
           oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN:
           22 plant structures; EXPRESSED DURING: 13 growth stages;
           Has 1807 Blast hits to 1807 proteins in 277 species:
           Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
           Plants - 385; Viruses - 0; Other Eukaryotes - 339
           (source: NCBI BLink). | chr5:20498697-20501611 REVERSE
           LENGTH=584
          Length = 584

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/266 (38%), Positives = 151/266 (56%), Gaps = 28/266 (10%)

Query: 65  KAISSIRRSYETELEQSEKRKQDLLAEIVFEEQRGRELSKIVNELVPASKINSIQKPARA 124
           + +S+  + Y T+L++SE+RK++LLAEI+ EEQRGRELS  + E++  +   + +KP R 
Sbjct: 338 RGVSTSTKGYATKLQESEERKRELLAEIMLEEQRGRELSVNLKEILTENSSEAEEKPLRT 397

Query: 125 -RKRSTDRSRMSMRLTEEAEKYIEDFISNVEDTDISSLDGERSETSSSIGGLIKPETSNS 183
            ++      RMSM LT+EAE++I++FISN+EDTD SSL+ ERSE+SSS  G+IK ++S S
Sbjct: 398 RKRSKDRSRRMSMCLTDEAEQFIDEFISNIEDTDFSSLEDERSESSSSF-GMIKTQSSQS 456

Query: 184 PPIPRSIPALMDGITLPWLQWET--------CNDASPMTSMNNTLITSKTASSTQETTKL 235
               +S    MDG+ LPWLQWET        C   SP T  + +L+    + +TQ+ +  
Sbjct: 457 TSALKSTSVEMDGVMLPWLQWETPDVSAAVACLIKSPHTPNSKSLVWE--SDTTQDASSG 514

Query: 236 QDQRXXXXXXXXXXXPDCLQEYIGKDVFNKVYGYKDQSFSAKSKELRYDIDDYLKVKTNE 295
           +              P    + + K V               +K L+ D+ +YLK   + 
Sbjct: 515 RGTSIGTISSRGSWSP---YDSVTKPVM-------------PTKTLKIDVAEYLKRPNSS 558

Query: 296 DFLVERWKQRQRINSGSLLLCHPRLF 321
           D L E WK R RI+SGSL+LC   L 
Sbjct: 559 DILNETWKLRHRISSGSLVLCSRSLI 584