Miyakogusa Predicted Gene

Lj0g3v0259359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259359.1 Non Chatacterized Hit- tr|J3L6U8|J3L6U8_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB01G4,86,2e-16,
,CUFF.17088.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48500.2 | Symbols: PDE312, PTAC10 | Nucleic acid-binding, OB...   338   2e-93
AT3G48500.1 | Symbols: PDE312, PTAC10 | Nucleic acid-binding, OB...   338   2e-93

>AT3G48500.2 | Symbols: PDE312, PTAC10 | Nucleic acid-binding,
           OB-fold-like protein | chr3:17962209-17965408 FORWARD
           LENGTH=697
          Length = 697

 Score =  338 bits (868), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/268 (64%), Positives = 214/268 (79%), Gaps = 14/268 (5%)

Query: 1   MQVLQLQTSYLFTFPKPPINPSSSHFHRPLLLRNRP---LSGLVAKAFSSDEFPVDEDTF 57
           MQ+ Q  T   FTFP    NP++ +F +P  L+  P   +S L  + FSSDEFPVDE TF
Sbjct: 1   MQICQ--TKLNFTFP----NPTNPNFCKPKALQWSPPRRISLLPCRGFSSDEFPVDE-TF 53

Query: 58  PQNFTPPTQEAEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLRSPEAIEAF 117
            + F P  ++ EDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPL+SPEAIEAF
Sbjct: 54  LEKFGPKDKDTEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLQSPEAIEAF 113

Query: 118 QMLNPRYRKQKRLEMGLTEEEYNQKQFEIKGEIPDPLETTWAGPLVVRLVPPRDWPPQGW 177
           +ML P YRK+K  EMG+TE+E+  KQFEI+G+ P PLET+WAGP+V+R +PPRDWPP+GW
Sbjct: 114 KMLRPSYRKKKIKEMGITEDEWYAKQFEIRGDKPPPLETSWAGPMVLRQIPPRDWPPRGW 173

Query: 178 EVDREELAYIREAHKMQAKRVSVEEIENGVRT----ETDDVCLDRYKVFLKQYKEWVEAN 233
           EVDR+EL +IREAHK+ A+RV +E+++  +R       D +CL+R+KVFLKQYKEWVE N
Sbjct: 174 EVDRKELEFIREAHKLMAERVWLEDLDKDLRVGEDATVDKMCLERFKVFLKQYKEWVEDN 233

Query: 234 KDRLEEESYEQDQDYHPGRRKRGKDYKE 261
           KDRLEEESY+ DQD++PGRRKRGKDY++
Sbjct: 234 KDRLEEESYKLDQDFYPGRRKRGKDYED 261


>AT3G48500.1 | Symbols: PDE312, PTAC10 | Nucleic acid-binding,
           OB-fold-like protein | chr3:17962209-17965408 FORWARD
           LENGTH=668
          Length = 668

 Score =  338 bits (867), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/268 (64%), Positives = 214/268 (79%), Gaps = 14/268 (5%)

Query: 1   MQVLQLQTSYLFTFPKPPINPSSSHFHRPLLLRNRP---LSGLVAKAFSSDEFPVDEDTF 57
           MQ+ Q  T   FTFP    NP++ +F +P  L+  P   +S L  + FSSDEFPVDE TF
Sbjct: 1   MQICQ--TKLNFTFP----NPTNPNFCKPKALQWSPPRRISLLPCRGFSSDEFPVDE-TF 53

Query: 58  PQNFTPPTQEAEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLRSPEAIEAF 117
            + F P  ++ EDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPL+SPEAIEAF
Sbjct: 54  LEKFGPKDKDTEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLQSPEAIEAF 113

Query: 118 QMLNPRYRKQKRLEMGLTEEEYNQKQFEIKGEIPDPLETTWAGPLVVRLVPPRDWPPQGW 177
           +ML P YRK+K  EMG+TE+E+  KQFEI+G+ P PLET+WAGP+V+R +PPRDWPP+GW
Sbjct: 114 KMLRPSYRKKKIKEMGITEDEWYAKQFEIRGDKPPPLETSWAGPMVLRQIPPRDWPPRGW 173

Query: 178 EVDREELAYIREAHKMQAKRVSVEEIENGVRT----ETDDVCLDRYKVFLKQYKEWVEAN 233
           EVDR+EL +IREAHK+ A+RV +E+++  +R       D +CL+R+KVFLKQYKEWVE N
Sbjct: 174 EVDRKELEFIREAHKLMAERVWLEDLDKDLRVGEDATVDKMCLERFKVFLKQYKEWVEDN 233

Query: 234 KDRLEEESYEQDQDYHPGRRKRGKDYKE 261
           KDRLEEESY+ DQD++PGRRKRGKDY++
Sbjct: 234 KDRLEEESYKLDQDFYPGRRKRGKDYED 261