Miyakogusa Predicted Gene

Lj0g3v0259149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0259149.1 Non Chatacterized Hit- tr|H9G413|H9G413_ANOCA
Uncharacterized protein (Fragment) OS=Anolis
carolinen,31.86,4e-19,SUBFAMILY NOT NAMED,NULL; SLD5 PROTEIN,GINS
complex, subunit Sld5; Sld5,GINS complex,CUFF.17063.1
         (227 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49010.1 | Symbols: SLD5 | DNA replication protein-related | ...   255   2e-68
AT5G49010.2 | Symbols: SLD5 | DNA replication protein-related | ...   199   9e-52

>AT5G49010.1 | Symbols: SLD5 | DNA replication protein-related |
           chr5:19866464-19868074 FORWARD LENGTH=220
          Length = 220

 Score =  255 bits (651), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 168/227 (74%), Gaps = 7/227 (3%)

Query: 1   MDSNSVEGGPTVLTDDYDALISTTDFELLKRAWRSEKAAPEILRFESDLINRVREQIQLM 60
           M SNS  GG    + DY+ L+ST+D ELLKRAWR+EKAAPEIL++E  L++R +EQI+L+
Sbjct: 1   MASNSEAGG----SADYETLMSTSDVELLKRAWRNEKAAPEILQYEGALVDRAKEQIELV 56

Query: 61  EDTVEEKGAAGADPHSLSLYQMDIDRTLFLLRSYLRIRIQKIEKYMFHIQKTDELWNRLS 120
           E+T+E+    G DP  +SLYQMD+DR  FLLRSYLR+R+ KIEK+MFH   ++E   RLS
Sbjct: 57  EETIEDYVENGIDPLVVSLYQMDLDRAQFLLRSYLRVRLLKIEKFMFHNLNSEEAERRLS 116

Query: 121 TEEKNFTRRCTDDLKQHLEESVLSKLPENYQSVQKQSVISEEDDMVPEPQQDTFVLCRSK 180
            +EK F  RC DDL +H EE+VL KLPENYQSV KQS+ISE DDMVP+P  DTFV+CRSK
Sbjct: 117 EQEKVFATRCADDLAKHFEETVLLKLPENYQSVLKQSLISEVDDMVPQPHLDTFVVCRSK 176

Query: 181 EYLTGIQLEDGPVDDRSKLFEMEAGVLYFICYKSIKALVESGKIDLL 227
            +++    E+G   +  +  EME G LYFI YK +K  +ESG+IDL+
Sbjct: 177 NFVSLNLYEEG---ESPETVEMERGDLYFIRYKIVKRAIESGQIDLI 220


>AT5G49010.2 | Symbols: SLD5 | DNA replication protein-related |
           chr5:19866464-19867762 FORWARD LENGTH=191
          Length = 191

 Score =  199 bits (507), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 125/165 (75%), Gaps = 4/165 (2%)

Query: 1   MDSNSVEGGPTVLTDDYDALISTTDFELLKRAWRSEKAAPEILRFESDLINRVREQIQLM 60
           M SNS  GG      DY+ L+ST+D ELLKRAWR+EKAAPEIL++E  L++R +EQI+L+
Sbjct: 1   MASNSEAGGSA----DYETLMSTSDVELLKRAWRNEKAAPEILQYEGALVDRAKEQIELV 56

Query: 61  EDTVEEKGAAGADPHSLSLYQMDIDRTLFLLRSYLRIRIQKIEKYMFHIQKTDELWNRLS 120
           E+T+E+    G DP  +SLYQMD+DR  FLLRSYLR+R+ KIEK+MFH   ++E   RLS
Sbjct: 57  EETIEDYVENGIDPLVVSLYQMDLDRAQFLLRSYLRVRLLKIEKFMFHNLNSEEAERRLS 116

Query: 121 TEEKNFTRRCTDDLKQHLEESVLSKLPENYQSVQKQSVISEEDDM 165
            +EK F  RC DDL +H EE+VL KLPENYQSV KQS+ISE DDM
Sbjct: 117 EQEKVFATRCADDLAKHFEETVLLKLPENYQSVLKQSLISEVDDM 161