Miyakogusa Predicted Gene
- Lj0g3v0258629.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0258629.2 tr|F2DEQ1|F2DEQ1_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,85.71,3e-17,SUBFAMILY NOT
NAMED,NULL; EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT
(EIF-3),NULL; eIF3_p135,CUFF.17021.2
(147 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 242 8e-65
AT1G15290.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 173 4e-44
AT1G01320.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 166 7e-42
AT1G01320.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 166 7e-42
AT3G52140.4 | Symbols: | tetratricopeptide repeat (TPR)-contain... 82 1e-16
AT3G52140.3 | Symbols: | tetratricopeptide repeat (TPR)-contain... 82 1e-16
AT3G52140.2 | Symbols: | tetratricopeptide repeat (TPR)-contain... 82 1e-16
AT3G52140.1 | Symbols: | tetratricopeptide repeat (TPR)-contain... 82 1e-16
>AT4G28080.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:13948993-13957840 REVERSE
LENGTH=1819
Length = 1819
Score = 242 bits (617), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 113/149 (75%), Positives = 127/149 (85%), Gaps = 8/149 (5%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+EMA KYY DTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQM SLGRVVELA+KLPHV
Sbjct: 700 IEMARKYYTDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMHSLGRVVELAEKLPHV 759
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADITSCYE- 119
QSLC+HEM+ RAYKHILQAVVAAV+N +D+A+SIA+CLN+LLGTPS D S Y+
Sbjct: 760 QSLCVHEMIVRAYKHILQAVVAAVENTADVATSIATCLNVLLGTPS------DTESVYDE 813
Query: 120 -LKWKWVEMFLLKRFGWQWKHESGQDLRK 147
+KW WVE F+ KRFGW WKHE Q+LRK
Sbjct: 814 KIKWTWVETFISKRFGWDWKHEGCQELRK 842
>AT1G15290.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:5257327-5264814 REVERSE
LENGTH=1608
Length = 1608
Score = 173 bits (438), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 80/138 (57%), Positives = 107/138 (77%)
Query: 3 MAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHVQS 62
MA+ YY + ALP+LVADFGSLELSPVDGRTLTDFMH RGLQM SLG V +LA+KLPH+QS
Sbjct: 655 MAYGYYDEIALPRLVADFGSLELSPVDGRTLTDFMHIRGLQMRSLGHVAKLAEKLPHIQS 714
Query: 63 LCIHEMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGTPSPEINDADITSCYELKW 122
LCIHEM+ RA+KH+L+AV+A+V+N++++ ++A+ LN +LG E D Y L+
Sbjct: 715 LCIHEMITRAFKHLLRAVIASVNNMAELPVAVAASLNFMLGRRELEGCDRIPGEEYCLRL 774
Query: 123 KWVEMFLLKRFGWQWKHE 140
+W++ FL ++FGW K E
Sbjct: 775 QWLQKFLSRKFGWIQKDE 792
>AT1G01320.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:121582-130099 REVERSE
LENGTH=1787
Length = 1787
Score = 166 bits (419), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 111/152 (73%), Gaps = 8/152 (5%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+++A YY + A+PKLVADFGSLELSPVDGRTLTDFMHTRGL+M SLG VV+L+DKL HV
Sbjct: 674 VDLAQNYYTEVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGYVVKLSDKLSHV 733
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSD-MASSIASCLNILLGTPSPEINDADIT---- 115
QSLC+HEM+ RA KHILQAV++AV +D +A +A+ LN++LG P N A
Sbjct: 734 QSLCVHEMIVRALKHILQAVISAVATDTDKIAIKVAAALNMMLGIPE---NVAATPHNPW 790
Query: 116 SCYELKWKWVEMFLLKRFGWQWKHESGQDLRK 147
+ + L ++W+E FL KR+ + S +DLRK
Sbjct: 791 NVHPLIFRWLEKFLKKRYDYDLNAFSYKDLRK 822
>AT1G01320.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:121582-130099 REVERSE
LENGTH=1797
Length = 1797
Score = 166 bits (419), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 111/152 (73%), Gaps = 8/152 (5%)
Query: 1 MEMAHKYYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHV 60
+++A YY + A+PKLVADFGSLELSPVDGRTLTDFMHTRGL+M SLG VV+L+DKL HV
Sbjct: 674 VDLAQNYYTEVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGYVVKLSDKLSHV 733
Query: 61 QSLCIHEMVARAYKHILQAVVAAVDNVSD-MASSIASCLNILLGTPSPEINDADIT---- 115
QSLC+HEM+ RA KHILQAV++AV +D +A +A+ LN++LG P N A
Sbjct: 734 QSLCVHEMIVRALKHILQAVISAVATDTDKIAIKVAAALNMMLGIPE---NVAATPHNPW 790
Query: 116 SCYELKWKWVEMFLLKRFGWQWKHESGQDLRK 147
+ + L ++W+E FL KR+ + S +DLRK
Sbjct: 791 NVHPLIFRWLEKFLKKRYDYDLNAFSYKDLRK 822
>AT3G52140.4 | Symbols: | tetratricopeptide repeat (TPR)-containing
protein | chr3:19333232-19341295 FORWARD LENGTH=1419
Length = 1419
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 7 YYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHVQSLCIH 66
Y +D LPK + D +LE+SP+DG+TLT+ +H G+ + +GRV LPH+ LC++
Sbjct: 808 YLVDVVLPKFIEDLCTLEVSPMDGQTLTEALHAHGVNVRYIGRVANGVKHLPHLWDLCLN 867
Query: 67 EMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGT 104
E+ R+ KHIL+ ++ +++ D+ S+++ LN G
Sbjct: 868 EITVRSAKHILKDILRDIED-HDIGSAVSHFLNCFFGN 904
>AT3G52140.3 | Symbols: | tetratricopeptide repeat (TPR)-containing
protein | chr3:19333232-19341295 FORWARD LENGTH=1396
Length = 1396
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 7 YYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHVQSLCIH 66
Y +D LPK + D +LE+SP+DG+TLT+ +H G+ + +GRV LPH+ LC++
Sbjct: 808 YLVDVVLPKFIEDLCTLEVSPMDGQTLTEALHAHGVNVRYIGRVANGVKHLPHLWDLCLN 867
Query: 67 EMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGT 104
E+ R+ KHIL+ ++ +++ D+ S+++ LN G
Sbjct: 868 EITVRSAKHILKDILRDIED-HDIGSAVSHFLNCFFGN 904
>AT3G52140.2 | Symbols: | tetratricopeptide repeat (TPR)-containing
protein | chr3:19333232-19341295 FORWARD LENGTH=1407
Length = 1407
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 7 YYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHVQSLCIH 66
Y +D LPK + D +LE+SP+DG+TLT+ +H G+ + +GRV LPH+ LC++
Sbjct: 796 YLVDVVLPKFIEDLCTLEVSPMDGQTLTEALHAHGVNVRYIGRVANGVKHLPHLWDLCLN 855
Query: 67 EMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGT 104
E+ R+ KHIL+ ++ +++ D+ S+++ LN G
Sbjct: 856 EITVRSAKHILKDILRDIED-HDIGSAVSHFLNCFFGN 892
>AT3G52140.1 | Symbols: | tetratricopeptide repeat (TPR)-containing
protein | chr3:19333232-19341295 FORWARD LENGTH=1403
Length = 1403
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 7 YYIDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMSSLGRVVELADKLPHVQSLCIH 66
Y +D LPK + D +LE+SP+DG+TLT+ +H G+ + +GRV LPH+ LC++
Sbjct: 796 YLVDVVLPKFIEDLCTLEVSPMDGQTLTEALHAHGVNVRYIGRVANGVKHLPHLWDLCLN 855
Query: 67 EMVARAYKHILQAVVAAVDNVSDMASSIASCLNILLGT 104
E+ R+ KHIL+ ++ +++ D+ S+++ LN G
Sbjct: 856 EITVRSAKHILKDILRDIED-HDIGSAVSHFLNCFFGN 892