Miyakogusa Predicted Gene

Lj0g3v0258489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0258489.1 Non Chatacterized Hit- tr|K3Y203|K3Y203_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si008222,38.33,4e-17,RIX1,NULL,CUFF.17000.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30240.1 | Symbols:  | FUNCTIONS IN: binding; INVOLVED IN: bi...   156   6e-39
AT1G30240.2 | Symbols:  | unknown protein; Has 169 Blast hits to...   156   6e-39

>AT1G30240.1 | Symbols:  | FUNCTIONS IN: binding; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 21 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Armadillo-type fold
           (InterPro:IPR016024); Has 165 Blast hits to 164 proteins
           in 73 species: Archae - 0; Bacteria - 0; Metazoa - 47;
           Fungi - 68; Plants - 46; Viruses - 0; Other Eukaryotes -
           4 (source: NCBI BLink). | chr1:10641241-10645838 REVERSE
           LENGTH=825
          Length = 825

 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 10/188 (5%)

Query: 1   MVAFDHFVDDMNDVELKPRLLDTLISDSLSNPSE-------ISKVISLVKTHALLSESFT 53
           M +F+ F DDM D+ LKP++L  L+S+ + N  +       +SKV+S + TH LLSES  
Sbjct: 1   MASFERF-DDMCDLRLKPKILRNLLSEYVPNEKQPLTNFLSLSKVVSTISTHKLLSESPP 59

Query: 54  ESMNPELVEHWKSAVTSWFQRTWTLLFSD--KYCWAGISLLGVTCQECSAHRFIDSYSMW 111
            S++ +L    KSAV  W  R   L+ SD     W GI L+GVTCQECS+ RF  SYS+W
Sbjct: 60  ASIDQKLHAKSKSAVDDWVARLSALISSDMPDKSWVGICLIGVTCQECSSDRFFKSYSVW 119

Query: 112 FHKLLTFLQAPADSHRVRVASCASISALFARLSGFPKLNKYGVSYAVKVIQPVLRMIQDE 171
           F+ LL+ L+ PA S  VRVASC SIS L  RLS F    K  VS+A K+I P+++++ ++
Sbjct: 120 FNSLLSHLKNPASSRIVRVASCTSISDLLTRLSRFSNTKKDAVSHASKLILPIIKLLDED 179

Query: 172 NSEAIWEA 179
           +SEA+ E 
Sbjct: 180 SSEALLEG 187


>AT1G30240.2 | Symbols:  | unknown protein; Has 169 Blast hits to
           168 proteins in 75 species: Archae - 0; Bacteria - 0;
           Metazoa - 49; Fungi - 68; Plants - 46; Viruses - 0;
           Other Eukaryotes - 6 (source: NCBI BLink). |
           chr1:10641241-10645838 REVERSE LENGTH=827
          Length = 827

 Score =  156 bits (395), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 119/188 (63%), Gaps = 10/188 (5%)

Query: 1   MVAFDHFVDDMNDVELKPRLLDTLISDSLSNPSE-------ISKVISLVKTHALLSESFT 53
           M +F+ F DDM D+ LKP++L  L+S+ + N  +       +SKV+S + TH LLSES  
Sbjct: 1   MASFERF-DDMCDLRLKPKILRNLLSEYVPNEKQPLTNFLSLSKVVSTISTHKLLSESPP 59

Query: 54  ESMNPELVEHWKSAVTSWFQRTWTLLFSD--KYCWAGISLLGVTCQECSAHRFIDSYSMW 111
            S++ +L    KSAV  W  R   L+ SD     W GI L+GVTCQECS+ RF  SYS+W
Sbjct: 60  ASIDQKLHAKSKSAVDDWVARLSALISSDMPDKSWVGICLIGVTCQECSSDRFFKSYSVW 119

Query: 112 FHKLLTFLQAPADSHRVRVASCASISALFARLSGFPKLNKYGVSYAVKVIQPVLRMIQDE 171
           F+ LL+ L+ PA S  VRVASC SIS L  RLS F    K  VS+A K+I P+++++ ++
Sbjct: 120 FNSLLSHLKNPASSRIVRVASCTSISDLLTRLSRFSNTKKDAVSHASKLILPIIKLLDED 179

Query: 172 NSEAIWEA 179
           +SEA+ E 
Sbjct: 180 SSEALLEG 187