Miyakogusa Predicted Gene

Lj0g3v0258199.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0258199.1 Non Chatacterized Hit- tr|D7MLC3|D7MLC3_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,50,0.00000000000001,seg,NULL; DUF1442,Protein of unknown
function DUF1442,CUFF.16971.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G62280.1 | Symbols:  | Protein of unknown function (DUF1442) ...    60   2e-10
AT2G45360.1 | Symbols:  | Protein of unknown function (DUF1442) ...    47   2e-06

>AT5G62280.1 | Symbols:  | Protein of unknown function (DUF1442) |
           chr5:25017165-25017985 FORWARD LENGTH=236
          Length = 236

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 2/103 (1%)

Query: 1   MSGWSAEKAKRAYIQALKMAKKGKEPDVAEFISALAAGNNAQ-LMVVANXXXXXXXXXXX 59
           M+ WSAE A +AY+  LK  ++ KEP+VAEFISALAAGN+A+ + V              
Sbjct: 1   MAFWSAENATKAYLSTLKTDQRTKEPNVAEFISALAAGNSARKIAVACAGAANADILVAL 60

Query: 60  XXXXXXXXXXXXCVCCGENELQASKKALGVHR-HGLEFVVGDA 101
                       CV  G  EL  S+K L     H ++FVVG++
Sbjct: 61  IAAANQTRGQVVCVLRGIEELIISQKMLEPSEIHQIQFVVGES 103


>AT2G45360.1 | Symbols:  | Protein of unknown function (DUF1442) |
          chr2:18698619-18699360 FORWARD LENGTH=215
          Length = 215

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 28/42 (66%)

Query: 4  WSAEKAKRAYIQALKMAKKGKEPDVAEFISALAAGNNAQLMV 45
          WS E A  AYI  +K  K  KE  VAEF+SA AAG NA+L+V
Sbjct: 5  WSPETASDAYIDTVKSCKSDKESGVAEFLSATAAGWNARLIV 46