Miyakogusa Predicted Gene

Lj0g3v0258159.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0258159.1 tr|A8F8D9|A8F8D9_THELT Isochorismatase hydrolase
OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM
,34.07,1e-18,SUBFAMILY NOT NAMED,NULL;
PYRAZINAMIDASE/NICOTINAMIDASE,NULL; seg,NULL; Isochorismatase-like
hydrola,CUFF.16974.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23230.1 | Symbols: NIC2 | nicotinamidase 2 | chr5:7826005-78...   242   1e-64
AT5G23220.1 | Symbols: NIC3 | nicotinamidase 3 | chr5:7820068-78...   235   1e-62
AT3G16190.1 | Symbols:  | Isochorismatase family protein | chr3:...    55   3e-08

>AT5G23230.1 | Symbols: NIC2 | nicotinamidase 2 |
           chr5:7826005-7826601 REVERSE LENGTH=198
          Length = 198

 Score =  242 bits (618), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 140/193 (72%), Gaps = 1/193 (0%)

Query: 9   SSSYEKYEIRKRNPNPKSCALLVIDMQNYFSTIATPILPNLNTTIDLCRRASIPVIFTRH 68
           SSS   YE RKR PNPK  ALLVIDMQN+F ++A PIL N  TTID+CRRASIPV FTRH
Sbjct: 3   SSSSRTYETRKREPNPKIAALLVIDMQNHFYSMAEPILQNALTTIDICRRASIPVFFTRH 62

Query: 69  RHTSATDHPMLTEWWFGDFILDGTEEAELMGSLHRE-TEKDAVVGKRTYSAFAGTRXXXX 127
            H S TDH ML EWW GD ILDGT ++E++  ++R+ T  D +V K TYSAF  T     
Sbjct: 63  NHKSPTDHGMLGEWWNGDLILDGTTDSEIIPEINRQVTGPDEIVEKSTYSAFNNTHLQEK 122

Query: 128 XXXXXXXXXXXTGVMTNLCCETTARDAFGRGFRVFFSTDATATDDEDLHEATLKNMAHGF 187
                       GVMTNLCCETTAR+AF +GFRVFFSTDATAT +E+LHEATL N+A+GF
Sbjct: 123 LDKIGVKEVIVIGVMTNLCCETTAREAFVKGFRVFFSTDATATVNEELHEATLMNLAYGF 182

Query: 188 AYLIDCHRLKQAL 200
           AYL+DC RL++ L
Sbjct: 183 AYLVDCDRLRRGL 195


>AT5G23220.1 | Symbols: NIC3 | nicotinamidase 3 |
           chr5:7820068-7820664 REVERSE LENGTH=198
          Length = 198

 Score =  235 bits (600), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 141/193 (73%), Gaps = 1/193 (0%)

Query: 9   SSSYEKYEIRKRNPNPKSCALLVIDMQNYFSTIATPILPNLNTTIDLCRRASIPVIFTRH 68
           SSS  KYE RKR+PN K  ALLVIDMQN+FS++A PIL N+ TTID+CRRAS+PV FTRH
Sbjct: 3   SSSTRKYETRKRDPNSKIAALLVIDMQNHFSSMAKPILNNVLTTIDICRRASVPVFFTRH 62

Query: 69  RHTSATDHPMLTEWWFGDFILDGTEEAELMGSLHRE-TEKDAVVGKRTYSAFAGTRXXXX 127
            H S TDH ML EW  GD ILDGT ++E++  +  + T  D +V K TYSAF  TR    
Sbjct: 63  NHKSPTDHGMLGEWCNGDVILDGTTDSEIIQEIQGQVTGPDEMVEKNTYSAFNKTRLQEN 122

Query: 128 XXXXXXXXXXXTGVMTNLCCETTARDAFGRGFRVFFSTDATATDDEDLHEATLKNMAHGF 187
                       GVMTNLCCETTAR+AF +GFRVFFSTDATAT +E+LHEATL N+A GF
Sbjct: 123 LEKIGVKEVIVIGVMTNLCCETTAREAFIKGFRVFFSTDATATFNEELHEATLMNLAFGF 182

Query: 188 AYLIDCHRLKQAL 200
           AYL+DC +L+++L
Sbjct: 183 AYLVDCDKLRRSL 195


>AT3G16190.1 | Symbols:  | Isochorismatase family protein |
           chr3:5489883-5491195 REVERSE LENGTH=196
          Length = 196

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 72/185 (38%), Gaps = 34/185 (18%)

Query: 25  KSCALLVIDMQNYF--------STIATPILPNLNTTIDLCRRASIPVI------------ 64
           ++ ALLVIDMQN F              I+PN+   ++L R+  I VI            
Sbjct: 6   RNTALLVIDMQNDFIEEGAVTQVKGGKSIVPNVIRVVELARQRGILVIWVVREHDRQGRD 65

Query: 65  ---FTRHRHTSATDHPMLTEWWFGDFILDGTEEAELMGSLHRETEKDAVVGKRTYSAFAG 121
              F RH ++S    P          ++ GT  AEL+  L    E D  + K  +SAF  
Sbjct: 66  VELFRRHNYSSEKVGP----------VIKGTVGAELVDGLMINEEDDYKIVKTRFSAFFS 115

Query: 122 TRXXXXXXXXXXXXXXXTGVMTNLCCETTARDAFGRGF-RVFFSTDATATDDEDLHEATL 180
           T                 GV T  C   T  DA    +  V   TDATA    ++H A +
Sbjct: 116 TNLHSFLQTSGVTKLVIAGVQTPNCIRQTVFDAVALDYPNVTVITDATAAATPEIHTANI 175

Query: 181 KNMAH 185
            +M +
Sbjct: 176 LDMKN 180