Miyakogusa Predicted Gene

Lj0g3v0258149.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0258149.1 tr|F2D440|F2D440_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,26.83,0.000000003,seg,NULL,CUFF.16973.1
         (193 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23240.1 | Symbols:  | DNAJ heat shock N-terminal domain-cont...   105   2e-23

>AT5G23240.1 | Symbols:  | DNAJ heat shock N-terminal
           domain-containing protein | chr5:7826857-7828534 REVERSE
           LENGTH=465
          Length = 465

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/198 (34%), Positives = 100/198 (50%), Gaps = 8/198 (4%)

Query: 1   MSAFQAIRSISNWLYWQS-----PGSSSHEKSMTRVVYQLP-EPNIGKLRDAAAKRKLRE 54
           +SA +AIRSISNWLYW+S     P S     S+T    +   +P+I KL+D  A  K  +
Sbjct: 263 ISAVEAIRSISNWLYWRSSPYTKPLSPESNMSLTFTKRKKAVDPDIRKLQDVVAAMKQAD 322

Query: 55  TKRTSHQTPLNSIHPEEYWAPSTFALXXXXXXXXXXXXDEKPSVTKAQKKTRERDHGTRE 114
               + +     +  E+YW+PS  AL               P VT+    + E+    RE
Sbjct: 323 QSGRTKEKGSAYLLGEDYWSPSNAALPSSGNNNGSKAS-SNPQVTRKTFPSEEKPTSRRE 381

Query: 115 NHNSPFTWGFPVVTAMIAVATVRLH-EVELTTELKQHVGGSLAVEIVNSSWLQCVLAAAT 173
           N        FP+ TA++AV  V+        +EL  H+GGSLA+ IVNS W Q +LA  T
Sbjct: 382 NRRQFRIKKFPIGTAIVAVFLVQYQASYRAASELNDHIGGSLALSIVNSPWQQILLAGVT 441

Query: 174 WYMIGLAVVELVALIGNR 191
           WY IG  +++LV  + ++
Sbjct: 442 WYFIGAMLLQLVEAVQHK 459