Miyakogusa Predicted Gene

Lj0g3v0257719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257719.1 Non Chatacterized Hit- tr|H2M5X2|H2M5X2_ORYLA
Uncharacterized protein OS=Oryzias latipes GN=MBD4
PE=,37.32,5e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; 5-METHYLCYTOSINE
G/T MISMATCH-SPECIFIC DNA GLYCOSYLASE,NULL; HhH,CUFF.16947.1
         (207 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07930.3 | Symbols:  | DNA glycosylase superfamily protein | ...   172   2e-43
AT3G07930.1 | Symbols:  | DNA glycosylase superfamily protein | ...    69   2e-12
AT3G07930.2 | Symbols:  | DNA glycosylase superfamily protein | ...    67   9e-12

>AT3G07930.3 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:2526720-2528416 FORWARD LENGTH=445
          Length = 445

 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/168 (50%), Positives = 115/168 (68%), Gaps = 6/168 (3%)

Query: 40  VNKILSVSEKKDEAYKRITSDIKWVPPQSDICLIQQEHFQDPWKVMAICILLNNTTDTDE 99
           V+ +LS+S+K D+ Y R T D  WVPP+S   L+Q++H+ DPW+V+ IC+LLN T+   +
Sbjct: 284 VSPVLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQEDHWHDPWRVLVICMLLNKTSGA-Q 342

Query: 100 VRLAISNLFSLCPNATTCTQVSKDKIEETIHDILYYKQKTARLQKFSEEYLNENWTHVTY 159
            R  IS+LF LC +A T T+V +++IE  I  +   K++T  +Q+ S EYL E+WTHVT 
Sbjct: 343 TRGVISDLFGLCTDAKTATEVKEEEIENLIKPLGLQKKRTKMIQRLSLEYLQESWTHVTQ 402

Query: 160 LHGIGKYAADAYAIFCTGKWQRVTPAAGQNDHKLLDYWKFLHTIKHTL 207
           LHG+GKYAADAYAIFC G W RV P    NDH L  YW +L  I++ L
Sbjct: 403 LHGVGKYAADAYAIFCNGNWDRVKP----NDHMLNYYWDYLR-IRYKL 445


>AT3G07930.1 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:2526720-2528145 FORWARD LENGTH=352
          Length = 352

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 47/65 (72%), Gaps = 1/65 (1%)

Query: 40  VNKILSVSEKKDEAYKRITSDIKWVPPQSDICLIQQEHFQDPWKVMAICILLNNTTDT-D 98
           V+ +LS+S+K D+ Y R T D  WVPP+S   L+Q++H+ DPW+V+ IC+LLN T+D   
Sbjct: 284 VSPVLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQEDHWHDPWRVLVICMLLNKTSDAGS 343

Query: 99  EVRLA 103
           ++RL 
Sbjct: 344 DIRLV 348


>AT3G07930.2 | Symbols:  | DNA glycosylase superfamily protein |
           chr3:2526720-2528145 FORWARD LENGTH=358
          Length = 358

 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 47/68 (69%)

Query: 40  VNKILSVSEKKDEAYKRITSDIKWVPPQSDICLIQQEHFQDPWKVMAICILLNNTTDTDE 99
           V+ +LS+S+K D+ Y R T D  WVPP+S   L+Q++H+ DPW+V+ IC+LLN T+    
Sbjct: 284 VSPVLSLSQKTDDVYLRKTPDNTWVPPRSPCNLLQEDHWHDPWRVLVICMLLNKTSGAQV 343

Query: 100 VRLAISNL 107
           +  A S++
Sbjct: 344 IADAGSDI 351