Miyakogusa Predicted Gene

Lj0g3v0257619.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257619.1 Non Chatacterized Hit- tr|B9RGK0|B9RGK0_RICCO
WD-repeat protein, putative OS=Ricinus communis GN=RCO,34.71,6e-19,WD
REPEAT PROTEIN 26-RELATED,NULL; C-terminal to LisH motif.,CTLH,
C-terminal LisH motif; LISH,LisH ,CUFF.16948.1
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43920.1 | Symbols:  | transducin family protein / WD-40 repe...   162   1e-40
AT5G08560.2 | Symbols:  | transducin family protein / WD-40 repe...    93   7e-20
AT5G08560.1 | Symbols:  | transducin family protein / WD-40 repe...    93   7e-20

>AT5G43920.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:17673397-17675630 FORWARD
           LENGTH=523
          Length = 523

 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/164 (52%), Positives = 116/164 (70%), Gaps = 3/164 (1%)

Query: 2   MESNHSEVLIGSKALFKKHEFVRIIVQCLYSLGYSKSASCLEVESGVLFKSKEFQLLESH 61
           ME+   EVL GSK L KKHEF+RI+VQCLYSLG+  SASCLE ES +L+K+ + + LE  
Sbjct: 1   MENGLWEVL-GSKGLLKKHEFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQ 59

Query: 62  VLNGNWDGCIGFLNSMRD-IMGEAVESALFLVLRQCLMEYIKHGEVTLALDVLRKRVSAL 120
           VL+GNWD C+  L+ + D  M +   +AL+LV +QCL+EY+K G+V+LAL+VLRK+   L
Sbjct: 60  VLSGNWDSCVQVLDRIFDNSMDDTRNTALYLVFKQCLLEYLKRGDVSLALNVLRKQAPLL 119

Query: 121 HLDRYKVHSLANSMLSLKDTEIGGAVDGDAVRDLRRKLLTDLEK 164
            + + K+H LA  ++  K+ E  G VD   V DLRRKLL +LEK
Sbjct: 120 RMGKEKIHRLACDIVYSKEME-SGEVDNCLVLDLRRKLLVELEK 162


>AT5G08560.2 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:2771104-2773827 REVERSE LENGTH=589
          Length = 589

 Score = 93.2 bits (230), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 81/135 (60%)

Query: 2   MESNHSEVLIGSKALFKKHEFVRIIVQCLYSLGYSKSASCLEVESGVLFKSKEFQLLESH 61
           + S   +  IGSK + +K EFVRII + LYSLGY K+ + LE ESG+   +   +L    
Sbjct: 48  LPSQGDDETIGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQ 107

Query: 62  VLNGNWDGCIGFLNSMRDIMGEAVESALFLVLRQCLMEYIKHGEVTLALDVLRKRVSALH 121
           V +G WD  +  L+ +     +AV++A FL+L Q  +E++K  ++  AL  LR  ++ L 
Sbjct: 108 VKDGKWDQSVKTLHRIGFPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLR 167

Query: 122 LDRYKVHSLANSMLS 136
           ++  +VH LA+S++S
Sbjct: 168 INTKRVHELASSLIS 182


>AT5G08560.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:2771104-2773827 REVERSE LENGTH=589
          Length = 589

 Score = 93.2 bits (230), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 50/135 (37%), Positives = 81/135 (60%)

Query: 2   MESNHSEVLIGSKALFKKHEFVRIIVQCLYSLGYSKSASCLEVESGVLFKSKEFQLLESH 61
           + S   +  IGSK + +K EFVRII + LYSLGY K+ + LE ESG+   +   +L    
Sbjct: 48  LPSQGDDETIGSKGVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQ 107

Query: 62  VLNGNWDGCIGFLNSMRDIMGEAVESALFLVLRQCLMEYIKHGEVTLALDVLRKRVSALH 121
           V +G WD  +  L+ +     +AV++A FL+L Q  +E++K  ++  AL  LR  ++ L 
Sbjct: 108 VKDGKWDQSVKTLHRIGFPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLR 167

Query: 122 LDRYKVHSLANSMLS 136
           ++  +VH LA+S++S
Sbjct: 168 INTKRVHELASSLIS 182