Miyakogusa Predicted Gene

Lj0g3v0257609.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257609.1 CUFF.16946.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43920.1 | Symbols:  | transducin family protein / WD-40 repe...   213   6e-56
AT5G08560.2 | Symbols:  | transducin family protein / WD-40 repe...   129   6e-31
AT5G08560.1 | Symbols:  | transducin family protein / WD-40 repe...   129   6e-31
AT5G67320.1 | Symbols: HOS15 | WD-40 repeat family protein | chr...    65   2e-11
AT3G49660.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    50   5e-07
AT5G08390.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    50   7e-07
AT1G61210.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    50   9e-07
AT1G61210.2 | Symbols:  | Transducin/WD40 repeat-like superfamil...    50   9e-07
AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 | chr5:867...    48   3e-06
AT5G52820.1 | Symbols:  | WD-40 repeat family protein / notchles...    48   3e-06
AT1G11160.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    47   6e-06
AT1G10580.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    47   8e-06

>AT5G43920.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:17673397-17675630 FORWARD
           LENGTH=523
          Length = 523

 Score =  213 bits (541), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 105/174 (60%), Positives = 127/174 (72%), Gaps = 12/174 (6%)

Query: 4   LTEQLNSLWTVPSFFLGKWLVS----------KVQEDGKLTLKHTLFGHQSAVSFVAWSP 53
           L    N +W V     GK+L +          KV +D K+ LKHTL  HQ+ VSFV+WSP
Sbjct: 220 LVAHKNEVWFVQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSP 279

Query: 54  DDTKLLTCGNKEVLKLWDVETGTCKHTFGNQ--GFVVSSCAWFPNSKQFVCGSFDPEKGI 111
           DDTKLLTCGN EVLKLWDV+TG  +HTFGN   GF VSSCAWFP+S + VCGS DPE+GI
Sbjct: 280 DDTKLLTCGNAEVLKLWDVDTGVLRHTFGNNNTGFTVSSCAWFPDSTRLVCGSSDPERGI 339

Query: 112 CMWDCEGNEMRSWRGMRMPKVVDIAVTPDGEYLISIFLDKEIRILHLRTNAECV 165
            MWD +GNE+++WRG R+PKVVD+AVTPDGE +I++F DKEIRIL+L T  E V
Sbjct: 340 VMWDTDGNEIKAWRGTRIPKVVDLAVTPDGESMITVFSDKEIRILNLETKVERV 393


>AT5G08560.2 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:2771104-2773827 REVERSE LENGTH=589
          Length = 589

 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 12/170 (7%)

Query: 4   LTEQLNSLWTVPSFFLGKWLVS----------KVQEDGKLTLKHTLFGHQSAVSFVAWSP 53
           L    + +W +     GK+L S          ++  DG ++LKHTL GH   V  + WSP
Sbjct: 270 LESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIAILWSP 329

Query: 54  DDTKLLTCGNKEVLKLWDVETGTCKHTFGNQGFVVSSCAWFPNSKQFVCGSFDPEKGICM 113
           DD ++LTCG +EV++ WDV++G C H +   G    SC W+P+ +  + G  D  + ICM
Sbjct: 330 DDRQVLTCGAEEVIRRWDVDSGDCVHMYEKGGISPISCGWYPDGQGIIAGMTD--RSICM 387

Query: 114 WDCEGNEMRSWRGMRMPKVVDIAVTPDGEYLISIFLDKEIRILHLRTNAE 163
           WD +G E   W+G R  KV DIA+T DG++L+S+  D  I +       E
Sbjct: 388 WDLDGREKECWKGQRTQKVSDIAMTDDGKWLVSVCKDSVISLFDREATVE 437


>AT5G08560.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:2771104-2773827 REVERSE LENGTH=589
          Length = 589

 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 93/170 (54%), Gaps = 12/170 (7%)

Query: 4   LTEQLNSLWTVPSFFLGKWLVS----------KVQEDGKLTLKHTLFGHQSAVSFVAWSP 53
           L    + +W +     GK+L S          ++  DG ++LKHTL GH   V  + WSP
Sbjct: 270 LESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIAILWSP 329

Query: 54  DDTKLLTCGNKEVLKLWDVETGTCKHTFGNQGFVVSSCAWFPNSKQFVCGSFDPEKGICM 113
           DD ++LTCG +EV++ WDV++G C H +   G    SC W+P+ +  + G  D  + ICM
Sbjct: 330 DDRQVLTCGAEEVIRRWDVDSGDCVHMYEKGGISPISCGWYPDGQGIIAGMTD--RSICM 387

Query: 114 WDCEGNEMRSWRGMRMPKVVDIAVTPDGEYLISIFLDKEIRILHLRTNAE 163
           WD +G E   W+G R  KV DIA+T DG++L+S+  D  I +       E
Sbjct: 388 WDLDGREKECWKGQRTQKVSDIAMTDDGKWLVSVCKDSVISLFDREATVE 437


>AT5G67320.1 | Symbols: HOS15 | WD-40 repeat family protein |
           chr5:26857268-26860974 FORWARD LENGTH=613
          Length = 613

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 9/133 (6%)

Query: 31  GKLTLKHTLFGHQSAVSFVAWSPDDTKLLTCGNKEVLKLWDVETGTCKHTFGNQGFVVSS 90
           G+     T  GHQ  V+ V W P  + L +C +    K+W+++  T  H        + +
Sbjct: 436 GETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEIYT 495

Query: 91  CAWFPN-------SKQFVCGSFDPEKGICMWDCE-GNEMRSWRGMRMPKVVDIAVTPDGE 142
             W P        +KQ    S   +  + +WD E G  + S+ G R P V  +A +P+GE
Sbjct: 496 IRWSPTGPGTNNPNKQLTLASASFDSTVKLWDAELGKMLCSFNGHREP-VYSLAFSPNGE 554

Query: 143 YLISIFLDKEIRI 155
           Y+ S  LDK I I
Sbjct: 555 YIASGSLDKSIHI 567


>AT3G49660.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:18413690-18415223 FORWARD LENGTH=317
          Length = 317

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 41  GHQSAVSFVAWSPDDTKLLTCGNKEVLKLWDVETGTCKHTF---GNQGFVVSSCAWFPNS 97
           GH++ +S VA+S D   +++  + + LKLWDVETG+   T     N  F V+   + P S
Sbjct: 69  GHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVN---FNPQS 125

Query: 98  KQFVCGSFDPEKGICMWDCEGNEMRSWRGMRMPKVVDIAVTPDGEYLISIFLDKEIRI 155
              V GSFD  + + +WD    +           V  +    DG  ++S   D   RI
Sbjct: 126 NMIVSGSFD--ETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRI 181


>AT5G08390.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:2701448-2706910 FORWARD LENGTH=839
          Length = 839

 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 37  HTLFGHQSAVSFVAWSPDDTKLLTCGNKEVLKLWDVETGTCKHTFGNQGFVVSSCAWFPN 96
           HT  GH   V+ + ++PD   +++ G   V+K+WD+  G   H F +    + S  + P+
Sbjct: 137 HTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPH 196

Query: 97  SKQFVCGSFDPEKGICMWDCEGNEMRSWRGMRMPKVVDIAVTPDGEYLI 145
                 GS D  K +  WD E  E+    G     V  +   PDG+ ++
Sbjct: 197 EFLLATGSAD--KTVKFWDLETFELIGSGGTETTGVRCLTFNPDGKSVL 243


>AT1G61210.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:22564785-22571555 FORWARD LENGTH=1181
          Length = 1181

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 31  GKLTLKHTLFGHQSAVSFVAWSPDDTKLLTCGNKEVLKLWDVETGTCKHTFGNQGFVVSS 90
           GK T   +L GH SAV  VA+   +  +L   +  V+KLWDVE       F       S+
Sbjct: 46  GKPTSLMSLCGHTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSA 105

Query: 91  CAWFPNSKQFVCGSFDPEKGICMWDCEGNE-MRSWRGMRMPKVVDIAVTPDGEYLISIFL 149
             + P  +    GS D    I  WD      +++++G     +  I  TPDG +++S  L
Sbjct: 106 VEFHPFGEFLASGSSDANLKI--WDIRKKGCIQTYKGHSR-GISTIRFTPDGRWVVSGGL 162

Query: 150 DKEIRILHL 158
           D  +++  L
Sbjct: 163 DNVVKVWDL 171


>AT1G61210.2 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:22564785-22571555 FORWARD LENGTH=1179
          Length = 1179

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 31  GKLTLKHTLFGHQSAVSFVAWSPDDTKLLTCGNKEVLKLWDVETGTCKHTFGNQGFVVSS 90
           GK T   +L GH SAV  VA+   +  +L   +  V+KLWDVE       F       S+
Sbjct: 46  GKPTSLMSLCGHTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSA 105

Query: 91  CAWFPNSKQFVCGSFDPEKGICMWDCEGNE-MRSWRGMRMPKVVDIAVTPDGEYLISIFL 149
             + P  +    GS D    I  WD      +++++G     +  I  TPDG +++S  L
Sbjct: 106 VEFHPFGEFLASGSSDANLKI--WDIRKKGCIQTYKGHSR-GISTIRFTPDGRWVVSGGL 162

Query: 150 DKEIRILHL 158
           D  +++  L
Sbjct: 163 DNVVKVWDL 171


>AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 |
           chr5:8677117-8682058 FORWARD LENGTH=669
          Length = 669

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 39  LFGHQSAVSFVAWSPDDTKLLTCGNKEVLKLWDVETGTCKHTFGNQGFVVSSCAWFPNSK 98
           + GH S V  V W P+   + T  + + ++LWDV+TG C   F     +V S A  P+ +
Sbjct: 498 MAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGR 557

Query: 99  QFVCGSFDPEKGICMWD 115
               G  D +  I MWD
Sbjct: 558 YMASG--DEDGTIMMWD 572


>AT5G52820.1 | Symbols:  | WD-40 repeat family protein / notchless
           protein, putative | chr5:21401423-21404203 FORWARD
           LENGTH=473
          Length = 473

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 37  HTLFGHQSAVSFVAWSPDDTKLLTCGNKEVLKLWDVETGTCKHTFGNQGFVVSSCAWFPN 96
            T+ GH  AV  V++SPD  +L +      ++LWD+ T T   T       V + AW P+
Sbjct: 103 QTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPD 162

Query: 97  SKQFVCGSFDPEKGICMWDCEGNEM 121
            K  V GS   E  IC W+ +  E+
Sbjct: 163 GKHLVSGSKSGE--ICCWNPKKGEL 185


>AT1G11160.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:3733406-3739363 FORWARD LENGTH=1021
          Length = 1021

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 4/126 (3%)

Query: 31  GKLTLKHTLFGHQSAVSFVAWSPDDTKLLTCGNKEVLKLWDVETGTCKHTFGNQGFVVSS 90
           GK T   +L GH S V  VA++ ++  +L   +  V+KLWD+E       F       S+
Sbjct: 46  GKTTSPMSLCGHTSPVDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSA 105

Query: 91  CAWFPNSKQFVCGSFDPEKGICMWDCEGNE-MRSWRGMRMPKVVDIAVTPDGEYLISIFL 149
             + P  +    GS D    + +WD      +++++G     +  I  +PDG +++S  L
Sbjct: 106 VEFHPFGEFLASGSSD--TNLRVWDTRKKGCIQTYKGHTR-GISTIEFSPDGRWVVSGGL 162

Query: 150 DKEIRI 155
           D  +++
Sbjct: 163 DNVVKV 168


>AT1G10580.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr1:3491560-3493665 REVERSE LENGTH=573
          Length = 573

 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 38  TLFGHQSAVSFVAWSPDDTKLLTCGNKEVLKLWDVETGTCKHTF--GNQGFVVSSCAWFP 95
           T  GH  AV  + +S D +K LT G  + +K WD ETG    TF  G   +VV       
Sbjct: 321 TYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNP--D 378

Query: 96  NSKQFVCGSFDPEKGICMWDCEGNEMRSWRGMRMPKVVDIAVTPDGEYLISIFLDKEIRI 155
           + KQ +  +   +K I  WD    E+       +  V  I    +    ++   DK +R+
Sbjct: 379 DDKQNILLAGMSDKKIVQWDINTGEVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRV 438