Miyakogusa Predicted Gene

Lj0g3v0257579.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257579.1 tr|C1MLD4|C1MLD4_MICPC Ubiquinol cytochrome c
reductase OS=Micromonas pusilla (strain CCMP1545)
GN=M,28.57,7e-19,Ubiq_cyt_C_chap,Ubiquinol-cytochrome c
chaperone/UPF0174; BASIC FGF-REPRESSED ZIC BINDING PROTEIN
HO,NODE_18175_length_1266_cov_90.921799.path1.1
         (283 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51220.1 | Symbols:  | ubiquinol-cytochrome C chaperone famil...   376   e-105

>AT5G51220.1 | Symbols:  | ubiquinol-cytochrome C chaperone family
           protein | chr5:20821405-20823125 REVERSE LENGTH=281
          Length = 281

 Score =  376 bits (966), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/279 (64%), Positives = 220/279 (78%), Gaps = 4/279 (1%)

Query: 1   MLQRWRKAITPISIFRSHT---GTKFANAGTRHTYAKVA-AAPLPTIDDDKPQQPLVNLD 56
           ML R  + +T  S  RS T     K  +  +R+ YA VA AA  P    D P +  +NLD
Sbjct: 1   MLPRLARVVTQTSKLRSLTTNGSMKNLSFFSRYGYATVAPAAADPPSQKDFPSKSPINLD 60

Query: 57  KMFWSKPCSLALPRDSLMRVEEPDYQGIKRFFLRLMLFYSKQSRSIRGANVVYQRIISQV 116
           KMFWSKPCSLALP+DS +R++EPDY GI+RF L++M+FYSKQS SIRGANV+Y+RII+QV
Sbjct: 61  KMFWSKPCSLALPKDSPLRIDEPDYVGIRRFILKMMMFYSKQSMSIRGANVIYKRIIAQV 120

Query: 117 DKPPIYEAFNLEKTFKTTYSLLILHMWLCLRRLKQEGNEGVEFGQYLYEIYNHDVELRVS 176
           DKP IY+ FNLEKTFK TYSLL+LHMWL LRRLK++G EGV+ GQY+YEIYNHDVELRVS
Sbjct: 121 DKPAIYDVFNLEKTFKITYSLLVLHMWLVLRRLKEDGQEGVDLGQYVYEIYNHDVELRVS 180

Query: 177 KAGVNLLLAKWMKDLEKIFYGNIVAYDTALLPEAKPVDFSNVIWRNIFSDDGSSTPDAAA 236
           KAGVNLLLAKWMK+LE+IFYGN+VAYD ALLPEAKP D    +WRN+FSDDG++TPD   
Sbjct: 181 KAGVNLLLAKWMKELERIFYGNVVAYDAALLPEAKPNDLQIKLWRNVFSDDGTTTPDNTD 240

Query: 237 SKSVHAMARYARREVSCMTLTDKEALYSGNFMFTSLKKE 275
            K+  AMARY RRE+  ++LTDKE+++SGNF FT L+ +
Sbjct: 241 LKTAQAMARYVRRELGSLSLTDKESIFSGNFSFTPLENK 279