Miyakogusa Predicted Gene

Lj0g3v0257549.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257549.2 tr|G7IHZ6|G7IHZ6_MEDTR MMS19 nucleotide excision
repair protein-like protein OS=Medicago truncatula
,75,0,MMS19_N,Transcription protein MMS19, N-terminal; no
description,Armadillo-like helical; ARM repeat,A,CUFF.16960.2
         (513 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48120.1 | Symbols:  | ARM repeat superfamily protein | chr5:...   423   e-118

>AT5G48120.1 | Symbols:  | ARM repeat superfamily protein |
           chr5:19508210-19514774 REVERSE LENGTH=1134
          Length = 1134

 Score =  423 bits (1088), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/518 (42%), Positives = 329/518 (63%), Gaps = 10/518 (1%)

Query: 1   MAETTQLTRHIEAYVASSSTPTHQASSLDAIGYLVNTNALTLEALVREMEMYLTTSDHVV 60
           M E  QL +H+E +V ++ + + Q  SL AI   +  ++L++  LVREMEMYLTT+D++V
Sbjct: 2   MVEPNQLVQHLETFVDTNRSSSQQDDSLKAIASSLENDSLSITQLVREMEMYLTTTDNLV 61

Query: 61  RSRGILLLAEVLTRIASKPLGSSTIHSLAGFFNERLADWRAVRGALVGCLALLRRKSV-- 118
           R+RGILLLAE+L  + +KPL  + +H+L GFF+E+LADWRA+ GALVGCLALL+RK V  
Sbjct: 62  RARGILLLAEILDCLKAKPLNDTIVHTLVGFFSEKLADWRAMCGALVGCLALLKRKDVAG 121

Query: 119 --VDSDAKAIAQSILQYLQVQSLGQYDRKXXXXXXXXXXXXYSDAVAPLGEDLIYGICEA 176
              D D +A+A+S++Q +QVQ+L  ++RK            +S+A+  +G+ L+Y +CEA
Sbjct: 122 VVTDIDVQAMAKSMIQNVQVQALALHERKLAFELLECLLQQHSEAILTMGDLLVYAMCEA 181

Query: 177 IDTEKDPECLMLAFHIVESLAQLYPEPSGLLGSFATDIFAILEAYFPIHFTHPNSGDIHI 236
           ID EKDP+CLM+ FH+VE LA L+P PSG L S A+D+F ++  YFP+HFTH    + +I
Sbjct: 182 IDGEKDPQCLMIVFHLVELLAPLFPSPSGPLASDASDLFEVIGCYFPLHFTHTKDDEANI 241

Query: 237 QRDDLSRALMSAFSSTPLFEPFVIPXXXXXXXXXXXXAKIDSLKYLRECSSKYGAERISK 296
           +R+DLSR L+ A SSTP FEP+ IP            AK+DSLK L++C+ KYG +R+ K
Sbjct: 242 RREDLSRGLLLAISSTPFFEPYAIPLLLEKLSSSLPVAKVDSLKCLKDCALKYGVDRMKK 301

Query: 297 YAKAIWSSLKDTLYTYLGEPDFSFTQAPAGGIGFPKSDIAIEAMSLLQQLIVQNSSLLVS 356
           +  A+WS+LKDT Y+  G    SF        GF  ++I  +A+SLLQ+L+ Q+ S L  
Sbjct: 302 HYGALWSALKDTFYSSTG-THLSFAIESLTSPGFEMNEIHRDAVSLLQRLVKQDISFL-G 359

Query: 357 LIIDDQDVNMIFNTIASYDVYDAIPEQEKKKLHAIGRILYITAKTSITSCNAVFQSLFSQ 416
            ++DD  +N +F+TI  Y  Y  +P+  K ++  I +IL ++AK S+ SCN +F+++F +
Sbjct: 360 FVVDDTRINTVFDTIYRYPQYKEMPDPSKLEVLVISQILSVSAKASVQSCNIIFEAIFFR 419

Query: 417 MMDNSGF--SVSNIDSSLNVDSIPSQKVKLGFLYLCIELLSGCNELIVSEVPALQYNSKS 474
           +M+  G     S  D   N +S  S ++  G L+LCIELL+   +LI+        +  +
Sbjct: 420 LMNTLGIVEKTSTGDVVQNGNSTVSTRLYHGGLHLCIELLAASKDLILGFEECSPTSGCA 479

Query: 475 ETCCVILHSFSAPLFNAFGSVLAVRADRCPLGPDIYIG 512
            + C ++ SFS PL   F S +    D   +  D+Y+G
Sbjct: 480 NSGCSMVKSFSVPLIQVFTSAVCRSNDDSVV--DVYLG 515