Miyakogusa Predicted Gene

Lj0g3v0257529.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257529.3 tr|B9PCE8|B9PCE8_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_795088
PE=4,46.6,0.0000000000003,DNA REPAIR/TRANSCRIPTION PROTEIN
MET18/MMS19,NULL; seg,NULL,CUFF.16957.3
         (504 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48120.1 | Symbols:  | ARM repeat superfamily protein | chr5:...   336   3e-92

>AT5G48120.1 | Symbols:  | ARM repeat superfamily protein |
            chr5:19508210-19514774 REVERSE LENGTH=1134
          Length = 1134

 Score =  336 bits (861), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 202/509 (39%), Positives = 286/509 (56%), Gaps = 18/509 (3%)

Query: 1    MSYRRLVVEKMVELLSLDDVTLPFSLKVEALSDIGMTGMKYMLTILQGLGGAVFANLSE- 59
            MSY  +VV+ +V L       LP+ + +EA S++  TG KY+  ++QGL  A  ++LS+ 
Sbjct: 582  MSYMSIVVDNLVSLACSSHCGLPYQMILEATSEVCSTGPKYVEKMVQGLEEAFCSSLSDF 641

Query: 60   -VCRNVRSSEIAIQLLECYSCKLLPWIHENGGSEEFVVQFVVDIWSQAGNYVDLRAPFE- 117
             V  N  S +   QLL+C + KLLP + E  G E+ +V F + +W Q          F  
Sbjct: 642  YVNGNFESIDNCSQLLKCLTNKLLPRVAEIDGLEQLLVHFAISMWKQIEFCGVFSCDFNG 701

Query: 118  KGLLYAIMKVMQISVGSCSVESQNIILQKAYSIISSHTNFQFNEVGRSPLTPE--KYDIS 175
            +  + A M  M+  VG   V+SQN I+QKAYS++SS T      +  + +  E  + D+S
Sbjct: 702  REFVEAAMTTMRQVVGIALVDSQNSIIQKAYSVVSSCTLPAMESIPLTFVALEGLQRDLS 761

Query: 176  PRDEGMLSLFASVTIAVSPKTHIPNIRGVLRLFIIALLKGVVPVAQALGSMINKFISKAN 235
             RDE +LSLFASV IA SP   IP+ + ++ L ++ LLKG +P AQALGSM+NK  S + 
Sbjct: 762  SRDELILSLFASVIIAASPSASIPDAKSLIHLLLVTLLKGYIPAAQALGSMVNKLGSGSG 821

Query: 236  DAENFNDLTLEEALDVIFSTKIWVSSTDVLQGCNGTNNGSEMVLTDLCLGIANDRLLQTN 295
                  D +LEEA  +IF             G      GSE  ++ +CLG      LQT 
Sbjct: 822  GTNTSRDCSLEEACAIIFHADFASGKKISSNGSAKIIVGSETTMSKICLGYCGSLDLQTR 881

Query: 296  AICGLSWIGKGLLLRGHEKIKDITMIFIECLISGTKSALPLTKDSLENTEEQKWDPLIMK 355
            AI GL+WIGKGLL+RG+E++ +I ++ +ECL S              N       P  MK
Sbjct: 882  AITGLAWIGKGLLMRGNERVNEIALVLVECLKSN-------------NCSGHALHPSAMK 928

Query: 356  CSADAFHVLVSDSDDCLNRKFHAIIRPLYKQRFFSSIMPIFQQLITKXXXXXXXXXXXXX 415
             +ADAF +++SDS+ CLNRKFHA+IRPLYKQR FS+I+PI + LI               
Sbjct: 929  HAADAFSIIMSDSEVCLNRKFHAVIRPLYKQRCFSTIVPILESLIMNSQTSLSRTMLHVA 988

Query: 416  XAHIISDTPQIVIVSEAKKLIPVLLNCLSMLTDDIQDKDXXXXXXXXXXXXXTEKNGQEA 475
             AH+IS+ P  VI+   KKL P++L  LS+L+ D  +K+             T+  GQ++
Sbjct: 989  LAHVISNVPVTVILDNTKKLQPLILEGLSVLSLDSVEKETLFSLLLVLSGTLTDTKGQQS 1048

Query: 476  VTENAHIIINCLIKLVDYPHKTLVRETAV 504
             ++NAHIII CLIKL  YPH  +VRET++
Sbjct: 1049 ASDNAHIIIECLIKLTSYPHLMVVRETSI 1077