Miyakogusa Predicted Gene

Lj0g3v0257359.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257359.2 Non Chatacterized Hit- tr|H0X9P8|H0X9P8_OTOGA
Uncharacterized protein (Fragment) OS=Otolemur garnett,30.27,1e-17,RNA
recognition motif,RNA recognition motif domain; RNA-binding domain,
RBD,NULL; SUBFAMILY NOT NAME,CUFF.16913.2
         (265 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66010.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   326   8e-90
AT5G66010.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   217   6e-57
AT3G20890.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   191   3e-49

>AT5G66010.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:26399612-26400753 FORWARD LENGTH=255
          Length = 255

 Score =  326 bits (836), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 176/268 (65%), Positives = 205/268 (76%), Gaps = 16/268 (5%)

Query: 1   MFGSRGAMLGSGGVSDGYEVGSKRQRMMESNPYFAVSSGPGSFXXXXXXXXXXXXXXXXX 60
           M+GSRGAM GSGG    YEVGSKRQRMM+SNPY AV +GP SF                 
Sbjct: 1   MYGSRGAMFGSGG----YEVGSKRQRMMQSNPYLAVGTGPTSFPPFGYAGGFPVVRLRGL 56

Query: 61  XXXXXXXFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFPGAMQVEFALQRDRQN 120
                  FNC DIDI +FFAGL IVDVLLV+K+G+FSGEAFVVF G MQVE ALQRDR N
Sbjct: 57  P------FNCADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHN 110

Query: 121 MGRRYVEVFRCKKQDYYNAVAGEVSYEGIYDNDYHGSPPP---SRSKRFSDKEQMEYTEI 177
           MGRRYVEVFRC KQDYYNAVA E   EG Y+ +   SPPP   SR+KRFS+KE++EYTE+
Sbjct: 111 MGRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAKRFSEKEKLEYTEV 167

Query: 178 LKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEFVSPDEAKRAMSKD 237
           LKMRGLP++V K QI++FF  YK+I+ RV + CRPDGKATGEA+VEF + +EA+RAM+KD
Sbjct: 168 LKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKD 227

Query: 238 KMMIGSRYVELFPSTPDEARRAESRSRQ 265
           KM IGSRYVELFP+T +EARRAE+RSRQ
Sbjct: 228 KMSIGSRYVELFPTTREEARRAEARSRQ 255


>AT5G66010.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:26400277-26400753 FORWARD LENGTH=158
          Length = 158

 Score =  217 bits (553), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 113/161 (70%), Positives = 135/161 (83%), Gaps = 6/161 (3%)

Query: 108 MQVEFALQRDRQNMGRRYVEVFRCKKQDYYNAVAGEVSYEGIYDNDYHGSPPP---SRSK 164
           MQVE ALQRDR NMGRRYVEVFRC KQDYYNAVA E   EG Y+ +   SPPP   SR+K
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAE---EGAYEYEVRASPPPTGPSRAK 57

Query: 165 RFSDKEQMEYTEILKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKATGEAYVEF 224
           RFS+KE++EYTE+LKMRGLP++V K QI++FF  YK+I+ RV + CRPDGKATGEA+VEF
Sbjct: 58  RFSEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEF 117

Query: 225 VSPDEAKRAMSKDKMMIGSRYVELFPSTPDEARRAESRSRQ 265
            + +EA+RAM+KDKM IGSRYVELFP+T +EARRAE+RSRQ
Sbjct: 118 ETGEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSRQ 158


>AT3G20890.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:7319939-7321054 FORWARD LENGTH=292
          Length = 292

 Score =  191 bits (486), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/288 (38%), Positives = 160/288 (55%), Gaps = 33/288 (11%)

Query: 10  GSGGVSDGYEVGSKRQRMMESNP---YFAVSSGPGSFXXXXXXXXXXXXXXXXXXXXXXX 66
           G G   DG E+G KRQRM++  P   ++      G                         
Sbjct: 5   GYGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYNPYGFVAPPPPPPFPAVRLRGL 64

Query: 67  XFNCTDIDILKFFAGLTIVDVLLVNKSGRFSGEAFVVFPGAMQVEFALQRDRQNMGRRYV 126
            F+C ++D+++FF GL +VDVL V+++ + +GEAF V    +QV+FALQ++RQNMGRRYV
Sbjct: 65  PFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQNMGRRYV 124

Query: 127 EVFRCKKQDYYNAVAGEVSYEGIY-------------------------DNDYHGSPPPS 161
           EVFR  KQ+YY A+A EV+   ++                              G   P 
Sbjct: 125 EVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRISGGSSPR 184

Query: 162 RS---KRFSD--KEQMEYTEILKMRGLPFAVTKSQIVDFFKDYKLIEDRVHIACRPDGKA 216
           R     R SD  KE +E+T IL++RGLPF+  K  I+DFFKD++L ED VH+    +G+ 
Sbjct: 185 RHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVTVNGEGRP 244

Query: 217 TGEAYVEFVSPDEAKRAMSKDKMMIGSRYVELFPSTPDEARRAESRSR 264
           TGEA+VEF + ++++ AM KD+  +GSRY+ELFPS+ +E   A SR R
Sbjct: 245 TGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292