Miyakogusa Predicted Gene

Lj0g3v0257189.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257189.1 Non Chatacterized Hit- tr|Q9ARL7|Q9ARL7_HORVD
Putative serine/threonine kinase OS=Hordeum vulgare va,75.41,3e-19,
,CUFF.16901.1
         (78 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69220.2 | Symbols: SIK1 | Protein kinase superfamily protein...   107   1e-24
AT1G69220.1 | Symbols: SIK1 | Protein kinase superfamily protein...   107   1e-24

>AT1G69220.2 | Symbols: SIK1 | Protein kinase superfamily protein |
           chr1:26020298-26026119 REVERSE LENGTH=809
          Length = 809

 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 57/61 (93%)

Query: 18  NEIQLPPSIYQRLTSSSTLMNLAQELAYHKMCYEDMPLQELQATQEQRTIQNLLDTLRTI 77
           NE+ LPPS+YQRLT+SS+LMNLAQ LAYH+ CYE+MPLQELQATQEQ+TIQNL DTLRTI
Sbjct: 747 NEMPLPPSVYQRLTTSSSLMNLAQVLAYHRACYEEMPLQELQATQEQQTIQNLCDTLRTI 806

Query: 78  L 78
           L
Sbjct: 807 L 807


>AT1G69220.1 | Symbols: SIK1 | Protein kinase superfamily protein |
           chr1:26020298-26026119 REVERSE LENGTH=836
          Length = 836

 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 57/61 (93%)

Query: 18  NEIQLPPSIYQRLTSSSTLMNLAQELAYHKMCYEDMPLQELQATQEQRTIQNLLDTLRTI 77
           NE+ LPPS+YQRLT+SS+LMNLAQ LAYH+ CYE+MPLQELQATQEQ+TIQNL DTLRTI
Sbjct: 774 NEMPLPPSVYQRLTTSSSLMNLAQVLAYHRACYEEMPLQELQATQEQQTIQNLCDTLRTI 833

Query: 78  L 78
           L
Sbjct: 834 L 834