Miyakogusa Predicted Gene

Lj0g3v0257079.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0257079.1 tr|C9J5S9|C9J5S9_HUMAN DNA repair protein RAD51
homolog 2 (Fragment) OS=Homo sapiens GN=RAD51B PE=4 ,38.81,1e-16,DNA
REPAIR PROTEIN RAD51 HOMOLOG 2, R51H2,NULL; RECA/RAD51/RADA DNA
STRAND-PAIRING FAMILY MEMBER,NUL,CUFF.16895.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G28560.1 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam...   300   3e-82
AT2G28560.2 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam...   300   5e-82
AT2G28560.3 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam...   254   3e-68
AT2G28560.4 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) fam...   253   7e-68
AT2G45280.1 | Symbols: ATRAD51C, RAD51C | RAS associated with di...    64   8e-11
AT2G45280.2 | Symbols: RAD51C | RAS associated with diabetes pro...    64   8e-11
AT5G57450.2 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair ...    61   4e-10
AT5G57450.1 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair ...    61   4e-10
AT1G07745.2 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51...    60   8e-10
AT1G07745.1 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51...    60   9e-10
AT5G20850.1 | Symbols: ATRAD51, RAD51 | RAS associated with diab...    59   2e-09
AT3G22880.1 | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51...    49   2e-06

>AT2G28560.1 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
           protein | chr2:12237052-12239086 REVERSE LENGTH=371
          Length = 371

 Score =  300 bits (769), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 141/191 (73%), Positives = 166/191 (86%)

Query: 1   MANKVIKQMGLPKSIANIFTARNIITAKDALSLTDFELMELLDVGMAEVTSAMAHISEVV 60
           MANK+I +MGL   I+NIF ARNIITAKDALS+T+FELMELLDVGM E+ SA++ ISE  
Sbjct: 1   MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60

Query: 61  CPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCL 120
            PPCQ+A  L+E++V NE L+GHLPT LKGLD+ LCGGIPFGVLTELVGP GIGK+QFC+
Sbjct: 61  SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM 120

Query: 121 KLSLLASMPASCGGLDGRVIYIDVESKFSSKRLIEIGLKSFPEIFHKKGMAQEMAGRILI 180
           KL+L AS P + GGLDGRVIYIDVESKFSS+R+IE+GL+SFPE+FH KGMAQEMAGRIL+
Sbjct: 121 KLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILV 180

Query: 181 LRPTSLSEFAE 191
           LRPTSL+ F E
Sbjct: 181 LRPTSLANFTE 191


>AT2G28560.2 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
           protein | chr2:12236876-12239086 REVERSE LENGTH=370
          Length = 370

 Score =  300 bits (767), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 141/191 (73%), Positives = 166/191 (86%)

Query: 1   MANKVIKQMGLPKSIANIFTARNIITAKDALSLTDFELMELLDVGMAEVTSAMAHISEVV 60
           MANK+I +MGL   I+NIF ARNIITAKDALS+T+FELMELLDVGM E+ SA++ ISE  
Sbjct: 1   MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60

Query: 61  CPPCQTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCL 120
            PPCQ+A  L+E++V NE L+GHLPT LKGLD+ LCGGIPFGVLTELVGP GIGK+QFC+
Sbjct: 61  SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM 120

Query: 121 KLSLLASMPASCGGLDGRVIYIDVESKFSSKRLIEIGLKSFPEIFHKKGMAQEMAGRILI 180
           KL+L AS P + GGLDGRVIYIDVESKFSS+R+IE+GL+SFPE+FH KGMAQEMAGRIL+
Sbjct: 121 KLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILV 180

Query: 181 LRPTSLSEFAE 191
           LRPTSL+ F E
Sbjct: 181 LRPTSLANFTE 191


>AT2G28560.3 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
           protein | chr2:12236876-12238913 REVERSE LENGTH=338
          Length = 338

 Score =  254 bits (648), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 117/159 (73%), Positives = 139/159 (87%)

Query: 33  LTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLD 92
           +T+FELMELLDVGM E+ SA++ ISE   PPCQ+A  L+E++V NE L+GHLPT LKGLD
Sbjct: 1   MTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLD 60

Query: 93  EALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKR 152
           + LCGGIPFGVLTELVGP GIGK+QFC+KL+L AS P + GGLDGRVIYIDVESKFSS+R
Sbjct: 61  DTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRR 120

Query: 153 LIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAE 191
           +IE+GL+SFPE+FH KGMAQEMAGRIL+LRPTSL+ F E
Sbjct: 121 VIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTE 159


>AT2G28560.4 | Symbols: ATRAD51B, RAD51B | DNA repair (Rad51) family
           protein | chr2:12237438-12238913 REVERSE LENGTH=243
          Length = 243

 Score =  253 bits (645), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 117/159 (73%), Positives = 139/159 (87%)

Query: 33  LTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPTRLKGLD 92
           +T+FELMELLDVGM E+ SA++ ISE   PPCQ+A  L+E++V NE L+GHLPT LKGLD
Sbjct: 1   MTEFELMELLDVGMKEIRSAISFISEATSPPCQSARSLLEKKVENEHLSGHLPTHLKGLD 60

Query: 93  EALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSSKR 152
           + LCGGIPFGVLTELVGP GIGK+QFC+KL+L AS P + GGLDGRVIYIDVESKFSS+R
Sbjct: 61  DTLCGGIPFGVLTELVGPPGIGKSQFCMKLALSASFPVAYGGLDGRVIYIDVESKFSSRR 120

Query: 153 LIEIGLKSFPEIFHKKGMAQEMAGRILILRPTSLSEFAE 191
           +IE+GL+SFPE+FH KGMAQEMAGRIL+LRPTSL+ F E
Sbjct: 121 VIEMGLESFPEVFHLKGMAQEMAGRILVLRPTSLANFTE 159


>AT2G45280.1 | Symbols: ATRAD51C, RAD51C | RAS associated with
           diabetes protein 51C | chr2:18670103-18672041 FORWARD
           LENGTH=363
          Length = 363

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 6/97 (6%)

Query: 84  LPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYID 143
           + T    LD  L GGI    +TE+ G  GIGKTQ  ++LS+   +P  CGGL G+ IYID
Sbjct: 105 ITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYID 164

Query: 144 VESKFSSKRLIEIG------LKSFPEIFHKKGMAQEM 174
            E  F  +R ++I       ++ +    HK   A ++
Sbjct: 165 TEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQV 201


>AT2G45280.2 | Symbols: RAD51C | RAS associated with diabetes
           protein 51C | chr2:18670103-18672041 FORWARD LENGTH=387
          Length = 387

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 83  HLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYI 142
            + T    LD  L GGI    +TE+ G  GIGKTQ  ++LS+   +P  CGGL G+ IYI
Sbjct: 128 RITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYI 187

Query: 143 DVESKFSSKRLIEIG------LKSFPEIFHKKGMAQEM 174
           D E  F  +R ++I       ++ +    HK   A ++
Sbjct: 188 DTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQV 225


>AT5G57450.2 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair
           cross complementing 3 (XRCC3) | chr5:23274008-23274922
           REVERSE LENGTH=304
          Length = 304

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 65  QTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSL 124
           Q   +  E  +R       L T  + LD  L GGI    LTE+V  +G GKTQ CL+LSL
Sbjct: 2   QNGKIKPENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSL 61

Query: 125 LASMPASCGGLDGRVIYIDVESKFSSKRLIEIG---LKSFPEIF 165
              +P S GGL+G  +Y+  E  F  +RL ++     +S P I+
Sbjct: 62  CTQLPISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIY 105


>AT5G57450.1 | Symbols: XRCC3, ATXRCC3 | homolog of X-ray repair
           cross complementing 3 (XRCC3) | chr5:23274008-23274922
           REVERSE LENGTH=304
          Length = 304

 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 65  QTALLLMEQRVRNESLAGHLPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSL 124
           Q   +  E  +R       L T  + LD  L GGI    LTE+V  +G GKTQ CL+LSL
Sbjct: 2   QNGKIKPENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSL 61

Query: 125 LASMPASCGGLDGRVIYIDVESKFSSKRLIEIG---LKSFPEIF 165
              +P S GGL+G  +Y+  E  F  +RL ++     +S P I+
Sbjct: 62  CTQLPISHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIY 105


>AT1G07745.2 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51 D
           | chr1:2400797-2402492 REVERSE LENGTH=304
          Length = 304

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 8/144 (5%)

Query: 29  DALSLTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPTRL 88
           D   LT F   +     + E  + +  + E  C P    L L+E   RN+     L T  
Sbjct: 19  DLYELTAFSQRQTNADRLKEGITLILSLIERQCRPLVNGLKLLEDLHRNKHT---LSTGD 75

Query: 89  KGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKF 148
           K  D  L GG   G LTELVGP+  GKTQFC++    A+   +   L GRV+Y+D  + F
Sbjct: 76  KETDSLLQGGFREGQLTELVGPSSSGKTQFCMQ----AAASVAENHL-GRVLYLDTGNSF 130

Query: 149 SSKRLIEIGLKSFPEIFHKKGMAQ 172
           S++R+ +    S      +K M++
Sbjct: 131 SARRIAQFICSSSDATLGQKVMSR 154


>AT1G07745.1 | Symbols: ATRAD51D, RAD51D, SSN1 | homolog of RAD51 D
           | chr1:2400797-2402842 REVERSE LENGTH=322
          Length = 322

 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 69/144 (47%), Gaps = 8/144 (5%)

Query: 29  DALSLTDFELMELLDVGMAEVTSAMAHISEVVCPPCQTALLLMEQRVRNESLAGHLPTRL 88
           D   LT F   +     + E  + +  + E  C P    L L+E   RN+     L T  
Sbjct: 37  DLYELTAFSQRQTNADRLKEGITLILSLIERQCRPLVNGLKLLEDLHRNKHT---LSTGD 93

Query: 89  KGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKF 148
           K  D  L GG   G LTELVGP+  GKTQFC++    A+   +   L GRV+Y+D  + F
Sbjct: 94  KETDSLLQGGFREGQLTELVGPSSSGKTQFCMQ----AAASVAENHL-GRVLYLDTGNSF 148

Query: 149 SSKRLIEIGLKSFPEIFHKKGMAQ 172
           S++R+ +    S      +K M++
Sbjct: 149 SARRIAQFICSSSDATLGQKVMSR 172


>AT5G20850.1 | Symbols: ATRAD51, RAD51 | RAS associated with
           diabetes protein 51 | chr5:7070758-7072860 REVERSE
           LENGTH=342
          Length = 342

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%)

Query: 91  LDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYIDVESKFSS 150
           LD+ L GGI  G +TEL G    GKTQ C  L +   +P   GG +G+ +YID E  F  
Sbjct: 112 LDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDAEGTFRP 171

Query: 151 KRLIEI 156
           +RL++I
Sbjct: 172 QRLLQI 177


>AT3G22880.1 | Symbols: ATDMC1, DMC1, ARLIM15 | DNA repair (Rad51)
           family protein | chr3:8097948-8100740 REVERSE LENGTH=344
          Length = 344

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 37/73 (50%)

Query: 84  LPTRLKGLDEALCGGIPFGVLTELVGPAGIGKTQFCLKLSLLASMPASCGGLDGRVIYID 143
           + T  + LD+ L GGI    +TE  G    GKTQ    L +   +P +  G +G+V YID
Sbjct: 108 ITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYID 167

Query: 144 VESKFSSKRLIEI 156
            E  F   R++ I
Sbjct: 168 TEGTFRPDRIVPI 180