Miyakogusa Predicted Gene

Lj0g3v0256909.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0256909.1 Non Chatacterized Hit- tr|I1LS21|I1LS21_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,76.13,0,LUMAZINE_BIND,Lumazine-binding domain; seg,NULL; no
description,ATPase, F1/A1 complex, alpha subunit,CUFF.16891.1
         (276 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20690.1 | Symbols:  | lumazine-binding family protein | chr2...   344   4e-95

>AT2G20690.1 | Symbols:  | lumazine-binding family protein |
           chr2:8923342-8924621 FORWARD LENGTH=271
          Length = 271

 Score =  344 bits (883), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 171/244 (70%), Positives = 201/244 (82%), Gaps = 3/244 (1%)

Query: 23  RHHSTFTNLRFNPIAKPSPLRFFLPLTPQNPHHHRRRSAVVTNMFTGLVEELGTVKQLGM 82
           R   + TNLRF+ ++K S L        ++  HHRR++  + ++FTG+VEE+G VK LGM
Sbjct: 22  RTGESVTNLRFDCVSKSSKLSLKTS-CGRSRTHHRRQNLSIRSVFTGIVEEMGEVKDLGM 80

Query: 83  ASHGGFDLNVEAKTVLEGVILGDSIAVNGTCLTVTEFDLEGSNFTVGLSPETLRKTSLEE 142
           A HGGFDL + A+ VLE V LGDSIAVNGTCLTVTEF+ E   FTVGL+PETLRKTSLEE
Sbjct: 81  ADHGGFDLKIGARVVLEDVKLGDSIAVNGTCLTVTEFNAE--EFTVGLAPETLRKTSLEE 138

Query: 143 LEPGSVVNLERALLPTTRMGGHFVQGHVDGTGVIVSMDAEGDSLWVKVKAEKEVLKYIVP 202
           L+ GS VNLERAL P +RMGGH VQGHVDGTGVI SM+ EGDSLWVKVKA+K +LKYIVP
Sbjct: 139 LKKGSPVNLERALQPVSRMGGHVVQGHVDGTGVIESMEVEGDSLWVKVKADKGLLKYIVP 198

Query: 203 KGFIAVDGTSLTVVDVFDDEGCFNFMLVAYTQQKVVIPLKKVGRKVNLEVDILGKYVERL 262
           KGF+AVDGTSLTVVDVFD+E CFNFM++AYTQQ VVIP KK+G+KVNLEVDI+GKYVERL
Sbjct: 199 KGFVAVDGTSLTVVDVFDEESCFNFMMIAYTQQNVVIPTKKIGQKVNLEVDIMGKYVERL 258

Query: 263 LSSG 266
           L+SG
Sbjct: 259 LTSG 262