Miyakogusa Predicted Gene

Lj0g3v0256829.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0256829.2 Non Chatacterized Hit- tr|J9A5W9|J9A5W9_9PROT
Uncharacterized protein OS=alpha proteobacterium
IMCC1,43.14,2e-19,DUF962,Protein of unknown function
DUF962,CUFF.16870.2
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09085.1 | Symbols:  | Protein of unknown function (DUF962) |...   172   4e-44

>AT3G09085.1 | Symbols:  | Protein of unknown function (DUF962) |
           chr3:2782238-2782576 FORWARD LENGTH=112
          Length = 112

 Score =  172 bits (436), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 91/111 (81%)

Query: 1   MNFRSLEDFWVFYVSQHSKPSTRNWHFVGTILSIFSLLCSVLFSWWLLFFVPLSGYGCAW 60
           MNFRS E+FW FY+ QHS PSTR  HF+G I SI +L+CS+L +WW L  VPL GYG AW
Sbjct: 1   MNFRSFEEFWPFYMMQHSNPSTRRLHFIGIIASIVALICSILINWWFLALVPLLGYGFAW 60

Query: 61  YSHFFVEGNVPATFGHPFWSLICDYKMFGLMLTGQMDREIKRLGKRPVLQV 111
           YSHFFVEGNVPA+FGHP WS +CD KMF LMLTG M+RE+KRLGKRP+LQ+
Sbjct: 61  YSHFFVEGNVPASFGHPLWSFLCDLKMFSLMLTGSMEREMKRLGKRPLLQL 111