Miyakogusa Predicted Gene

Lj0g3v0256709.2
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0256709.2 Non Chatacterized Hit- tr|J3MA83|J3MA83_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G3,80.95,0.000000000003,seg,NULL,CUFF.16869.2
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active...    76   9e-15

>AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active 14
           | chr4:10878914-10881697 FORWARD LENGTH=483
          Length = 483

 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 8/124 (6%)

Query: 17  EVIMEIPLELMLTISKKLPWMXXXXXXXXXXXXXXXXNPANPETDXXXXXXXXXXYAFDC 76
            VIMEIPLELM+TI +K PWM                N  +PE D          ++FD 
Sbjct: 117 RVIMEIPLELMITIRQKHPWMFFPDIVPIGHPIFDIINSTDPEIDWDIRLACLLLFSFDR 176

Query: 77  QENFWQLYGDFLLSADESTSLFIATEVLLQQSQGCDFSPSLSMNT--------KGWYWLL 128
            ++FW+LYGDFL +ADE +SL +ATE  L + Q  D   ++            K W+  +
Sbjct: 177 DDHFWRLYGDFLPAADECSSLLLATEEDLAELQDPDLVSTIRQQQKRILDFWEKNWHSGV 236

Query: 129 SLKV 132
            LK+
Sbjct: 237 PLKI 240