Miyakogusa Predicted Gene
- Lj0g3v0256709.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0256709.2 Non Chatacterized Hit- tr|J3MA83|J3MA83_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G3,80.95,0.000000000003,seg,NULL,CUFF.16869.2
(142 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active... 76 9e-15
>AT4G20130.1 | Symbols: PTAC14 | plastid transcriptionally active 14
| chr4:10878914-10881697 FORWARD LENGTH=483
Length = 483
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 17 EVIMEIPLELMLTISKKLPWMXXXXXXXXXXXXXXXXNPANPETDXXXXXXXXXXYAFDC 76
VIMEIPLELM+TI +K PWM N +PE D ++FD
Sbjct: 117 RVIMEIPLELMITIRQKHPWMFFPDIVPIGHPIFDIINSTDPEIDWDIRLACLLLFSFDR 176
Query: 77 QENFWQLYGDFLLSADESTSLFIATEVLLQQSQGCDFSPSLSMNT--------KGWYWLL 128
++FW+LYGDFL +ADE +SL +ATE L + Q D ++ K W+ +
Sbjct: 177 DDHFWRLYGDFLPAADECSSLLLATEEDLAELQDPDLVSTIRQQQKRILDFWEKNWHSGV 236
Query: 129 SLKV 132
LK+
Sbjct: 237 PLKI 240