Miyakogusa Predicted Gene

Lj0g3v0256559.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0256559.1 Non Chatacterized Hit- tr|D7SJJ1|D7SJJ1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,54.35,9e-18,Homeodomain-like,Homeodomain-like; HTH_MYB,Myb domain;
TELOMERIC REPEAT BINDING PROTEIN 1,NULL; TELO,CUFF.16858.1
         (336 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15720.1 | Symbols: TRFL5 | TRF-like 5 | chr1:5406138-5407310...    75   4e-14
AT1G17520.1 | Symbols:  | Homeodomain-like/winged-helix DNA-bind...    53   2e-07
AT5G58340.2 | Symbols:  | myb-like HTH transcriptional regulator...    53   3e-07
AT5G58340.1 | Symbols:  | myb-like HTH transcriptional regulator...    53   3e-07
AT1G17460.1 | Symbols: TRFL3 | TRF-like 3 | chr1:5999519-6002546...    52   5e-07
AT1G17460.2 | Symbols: TRFL3 | TRF-like 3 | chr1:5999519-6002546...    52   5e-07
AT1G72740.2 | Symbols:  | Homeodomain-like/winged-helix DNA-bind...    51   9e-07
AT1G72740.1 | Symbols:  | Homeodomain-like/winged-helix DNA-bind...    51   9e-07
AT3G49850.1 | Symbols: TRB3, ATTRB3, TBP2 | telomere repeat bind...    50   3e-06

>AT1G15720.1 | Symbols: TRFL5 | TRF-like 5 | chr1:5406138-5407310
           FORWARD LENGTH=390
          Length = 390

 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 134/317 (42%), Gaps = 73/317 (23%)

Query: 78  SPISAAFRAAYCTVAVECTLKYL-EVDLSSPKYIDAVQRIWSGRVRQMRPSSGGESQCPL 136
           S I  + ++AYC  AVECTL+++  V+ S   + DA++RIW  R+  ++     E +  L
Sbjct: 79  SVIMGSLKSAYCWTAVECTLRFMWPVNASDGFFGDALERIWRNRIGTLK-----EKESDL 133

Query: 137 FSEELERWMTEIEASLIDTCIRDRLAALKNTRVVAIQKLKIFLAESWDNFDPSFLEQLA- 195
            + EL +W +++  +  +  I  ++    N R  AI  L   L E W     S LE  A 
Sbjct: 134 VTRELLKWESDLNKAFEEPEIYQKIRET-NIRYNAISHLNQLLKEQWALLGCSSLESEAR 192

Query: 196 ---------------GENDVFLSNVAK-GWCLPPQG-----QKEQQKETA-NVG------ 227
                          G N    ++V + G    P G     + EQ+ E + N G      
Sbjct: 193 KRFLKRKDSPYASRRGGNREKANDVEEVGGVENPDGVGKVNEHEQEHEPSLNKGEMLVAR 252

Query: 228 -------------------DRSPTTADEWKKFV-------NRSCSGTSYGT--------L 253
                              D+ P  A E    V       NR+ +  S GT         
Sbjct: 253 ELKDFLLEIQRLIDPITRQDQEPNNAMEHSVDVTPQPDGANRTDAEDSEGTSSSRRVRPH 312

Query: 254 LPSPKMKKVSPLKEYDDSTNVIKKRRITKRWCQLEKETLLAGVNKFGEGNWTFILSTHKD 313
           LP+P+   VSPLK+        + RR  K W   E   L  GV ++G+ +W  I +++  
Sbjct: 313 LPTPEPLNVSPLKK--GRLERPRPRRPMKFWTSEEVAALREGVKEYGK-SWKDIKNSYPV 369

Query: 314 VFKGRTSVDLKDKWRNM 330
           VF  R+ VDLKDKWRN+
Sbjct: 370 VFADRSEVDLKDKWRNL 386


>AT1G17520.1 | Symbols:  | Homeodomain-like/winged-helix DNA-binding
           family protein | chr1:6024959-6027224 REVERSE LENGTH=296
          Length = 296

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 283 RWCQLEKETLLAGVNKFGEGNWTFILSTHK--DVFKGRTSVDLKDKWRNMNLHTGI 336
           +W   E+E LLAGV K G G W  IL   +  +    R+++DLKDKWRN+++  GI
Sbjct: 7   KWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNLSVAPGI 62


>AT5G58340.2 | Symbols:  | myb-like HTH transcriptional regulator
           family protein | chr5:23582607-23584245 FORWARD
           LENGTH=448
          Length = 448

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 22/168 (13%)

Query: 170 VAIQKLKIFLAESWDNFDPSFLEQLAGENDVFLSNVAKGWCLPPQ-------GQKEQQKE 222
           +A ++LK +L E   + DPS  +   GE      + +     PP        G ++  + 
Sbjct: 293 MAARELKEYLVEIQGHIDPSTRQ---GEEPNSAIDHSVDVTPPPTRVNRTGTGCQDHNEA 349

Query: 223 TANVGDRSPTTADEWKKFVNRSCSGTSYGTLLPSPKMKKVSPLKEYDDSTNVIKKRRITK 282
           + NV ++   + + W   V             P+P    VSPLK+   +   +  RR  K
Sbjct: 350 SDNVNEKGSDSQETWSSRVR---------PRRPTPVTLSVSPLKKGGLAKPHV--RRPKK 398

Query: 283 RWCQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTSVDLKDKWRNM 330
            W   E E L  GV ++G+ +W  I + +  VF  RT VDLKDKWRN+
Sbjct: 399 FWKPEEVEALREGVKEYGK-SWKDIKNGNPTVFAERTEVDLKDKWRNL 445



 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 7/114 (6%)

Query: 83  AFRAAYCTVAVECTLKYL-EVDLSSPKYIDAVQRIWSGRVRQMRPSSGGESQCPLFSEEL 141
           + ++AYC  A ECTL+++  +  S   + DA++RIW+ R+  ++     ES   L + +L
Sbjct: 84  SHKSAYCWTATECTLRFMWPMFASDGLFTDALERIWTKRIGILK-----ESGSDLVTCDL 138

Query: 142 ERWMTEIEASLIDTCIRDRLAALKNTRVVAIQKLKIFLAESWDNFDPSFLEQLA 195
            +W ++++ +L D  +  R+    N R  AI  L   L E W     S LE +A
Sbjct: 139 LKWESDLKKALGDPELYQRIRET-NIRYTAISFLTQLLKEQWALLGSSSLESVA 191


>AT5G58340.1 | Symbols:  | myb-like HTH transcriptional regulator
           family protein | chr5:23582607-23584245 FORWARD
           LENGTH=448
          Length = 448

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 22/168 (13%)

Query: 170 VAIQKLKIFLAESWDNFDPSFLEQLAGENDVFLSNVAKGWCLPPQ-------GQKEQQKE 222
           +A ++LK +L E   + DPS  +   GE      + +     PP        G ++  + 
Sbjct: 293 MAARELKEYLVEIQGHIDPSTRQ---GEEPNSAIDHSVDVTPPPTRVNRTGTGCQDHNEA 349

Query: 223 TANVGDRSPTTADEWKKFVNRSCSGTSYGTLLPSPKMKKVSPLKEYDDSTNVIKKRRITK 282
           + NV ++   + + W   V             P+P    VSPLK+   +   +  RR  K
Sbjct: 350 SDNVNEKGSDSQETWSSRVR---------PRRPTPVTLSVSPLKKGGLAKPHV--RRPKK 398

Query: 283 RWCQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTSVDLKDKWRNM 330
            W   E E L  GV ++G+ +W  I + +  VF  RT VDLKDKWRN+
Sbjct: 399 FWKPEEVEALREGVKEYGK-SWKDIKNGNPTVFAERTEVDLKDKWRNL 445



 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 7/114 (6%)

Query: 83  AFRAAYCTVAVECTLKYL-EVDLSSPKYIDAVQRIWSGRVRQMRPSSGGESQCPLFSEEL 141
           + ++AYC  A ECTL+++  +  S   + DA++RIW+ R+  ++     ES   L + +L
Sbjct: 84  SHKSAYCWTATECTLRFMWPMFASDGLFTDALERIWTKRIGILK-----ESGSDLVTCDL 138

Query: 142 ERWMTEIEASLIDTCIRDRLAALKNTRVVAIQKLKIFLAESWDNFDPSFLEQLA 195
            +W ++++ +L D  +  R+    N R  AI  L   L E W     S LE +A
Sbjct: 139 LKWESDLKKALGDPELYQRIRET-NIRYTAISFLTQLLKEQWALLGSSSLESVA 191


>AT1G17460.1 | Symbols: TRFL3 | TRF-like 3 | chr1:5999519-6002546
           FORWARD LENGTH=604
          Length = 604

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 278 RRITKRWCQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTSVDLKDKWRNM 330
           R++ + W   E E L+ GV+K+G G WT I       +  RT+VDLKDKWRN+
Sbjct: 493 RKLHRAWTISEVEKLVEGVSKYGVGKWTEIKKLSFSPYTHRTTVDLKDKWRNL 545


>AT1G17460.2 | Symbols: TRFL3 | TRF-like 3 | chr1:5999519-6002546
           FORWARD LENGTH=624
          Length = 624

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 278 RRITKRWCQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTSVDLKDKWRNM 330
           R++ + W   E E L+ GV+K+G G WT I       +  RT+VDLKDKWRN+
Sbjct: 513 RKLHRAWTISEVEKLVEGVSKYGVGKWTEIKKLSFSPYTHRTTVDLKDKWRNL 565


>AT1G72740.2 | Symbols:  | Homeodomain-like/winged-helix DNA-binding
           family protein | chr1:27380499-27382687 REVERSE
           LENGTH=281
          Length = 281

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 283 RWCQLEKETLLAGVNKFGEGNWTFILSTHK--DVFKGRTSVDLKDKWRNMNLHTG 335
           +W   E+E LLAG+ K G G W  IL   +  D    R+++DLKDKWRN+++  G
Sbjct: 7   KWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLSVPPG 61


>AT1G72740.1 | Symbols:  | Homeodomain-like/winged-helix DNA-binding
           family protein | chr1:27380499-27382687 REVERSE
           LENGTH=287
          Length = 287

 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 283 RWCQLEKETLLAGVNKFGEGNWTFILSTHK--DVFKGRTSVDLKDKWRNMNLHTG 335
           +W   E+E LLAG+ K G G W  IL   +  D    R+++DLKDKWRN+++  G
Sbjct: 7   KWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNLSVPPG 61


>AT3G49850.1 | Symbols: TRB3, ATTRB3, TBP2 | telomere repeat binding
           factor 3 | chr3:18489451-18490731 FORWARD LENGTH=295
          Length = 295

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 283 RWCQLEKETLLAGVNKFGEGNWTFILS--THKDVFKGRTSVDLKDKWRNMNL 332
           +W   E+  L AGV K G G W  ILS   +  + K R++VDLKDKWRN+++
Sbjct: 7   KWTPEEETALKAGVLKHGTGKWRTILSDPVYSTILKSRSNVDLKDKWRNISV 58