Miyakogusa Predicted Gene

Lj0g3v0255239.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0255239.2 Non Chatacterized Hit- tr|I1LV41|I1LV41_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,82.26,0,no
description,Exonuclease; Ribonuclease H-like,Ribonuclease H-like
domain; EXONUCLEASE,NULL; no des,CUFF.16764.2
         (265 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G15080.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   338   3e-93
AT2G48100.3 | Symbols:  | Exonuclease family protein | chr2:1967...   105   3e-23
AT2G48100.2 | Symbols:  | Exonuclease family protein | chr2:1967...   105   3e-23
AT2G48100.1 | Symbols:  | Exonuclease family protein | chr2:1967...   105   3e-23
AT3G27970.1 | Symbols:  | Exonuclease family protein | chr3:1038...   104   6e-23
AT5G40310.1 | Symbols:  | Exonuclease family protein | chr5:1611...   103   1e-22
AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 | c...    83   2e-16
AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 | c...    82   4e-16
AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 | c...    77   1e-14
AT5G05540.2 | Symbols: SDN2 | small RNA degrading nuclease 2 | c...    77   1e-14
AT5G25800.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    72   3e-13
AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 | c...    71   6e-13
AT2G48100.4 | Symbols:  | Exonuclease family protein | chr2:1967...    69   2e-12
AT3G50090.1 | Symbols:  | Exonuclease family protein | chr3:1857...    60   2e-09

>AT3G15080.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr3:5074319-5076327
           FORWARD LENGTH=275
          Length = 275

 Score =  338 bits (866), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 159/231 (68%), Positives = 183/231 (79%)

Query: 7   TQFSPNWAXXXXXXXXXXXGSKTKNSEEDTLKSILGKRKERPDDESNDSQINPLIPVNDD 66
            Q +PNW+           G+  K+S  +   SILGKRKERPD E +  +INPL PVNDD
Sbjct: 18  VQLNPNWSLLQQKLKSDSHGNTRKSSNPENPSSILGKRKERPDSEVDVPKINPLAPVNDD 77

Query: 67  ASLTDAVAMDCEMVGVGSGNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRP 126
           +SLTD VAMDCEMVGV  G KSALGRVTLVNKWGNV+YDEFV+P+E VVDFRT ISG+RP
Sbjct: 78  SSLTDEVAMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDEFVRPVEHVVDFRTSISGIRP 137

Query: 127 RDLRKGKDFWTVQKKVAELIKGRILVGHALSNDFKALLLSHPKKDIRDTSEYQPFLNSNS 186
           RDLRK KDF   Q KVAELIKG+ILVGHAL ND KALLL+HPKKDIRDT EYQPFL   +
Sbjct: 138 RDLRKAKDFRVAQTKVAELIKGKILVGHALHNDLKALLLTHPKKDIRDTGEYQPFLKGKT 197

Query: 187 RIALRHLAAERLGVKIQTGEHCPIQDARAAMLLYQRNRKEWEKSIKDQSRI 237
           R +L+HLA+E LG  IQ GEHCPI DARAAM+LYQ+NRKEWEK++KDQ+R+
Sbjct: 198 RKSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNRKEWEKTVKDQTRM 248


>AT2G48100.3 | Symbols:  | Exonuclease family protein |
           chr2:19671245-19672847 FORWARD LENGTH=344
          Length = 344

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 10/165 (6%)

Query: 72  AVAMDCEMVGVGS-GNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLR 130
           A+A+DCEMVG G+ G       V LV+   NVI+   V+P+  V D+R +I+GL   DL+
Sbjct: 132 AMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLK 191

Query: 131 KGKDFWTVQKKVAELIKG--------RILVGHALSNDFKALLLSHPKKDIRDTSEYQPFL 182
            G     V+++V   + G         +LVGH L +D   L L +P   +RDT++Y P +
Sbjct: 192 DGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLM 251

Query: 183 NSN-SRIALRHLAAERLGVKIQTGEHCPIQDARAAMLLYQRNRKE 226
            +N    +L++L    LG KIQ G+H   +D  +AM LY+R R +
Sbjct: 252 KTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQ 296


>AT2G48100.2 | Symbols:  | Exonuclease family protein |
           chr2:19671245-19672847 FORWARD LENGTH=344
          Length = 344

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 10/165 (6%)

Query: 72  AVAMDCEMVGVGS-GNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLR 130
           A+A+DCEMVG G+ G       V LV+   NVI+   V+P+  V D+R +I+GL   DL+
Sbjct: 132 AMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLK 191

Query: 131 KGKDFWTVQKKVAELIKG--------RILVGHALSNDFKALLLSHPKKDIRDTSEYQPFL 182
            G     V+++V   + G         +LVGH L +D   L L +P   +RDT++Y P +
Sbjct: 192 DGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLM 251

Query: 183 NSN-SRIALRHLAAERLGVKIQTGEHCPIQDARAAMLLYQRNRKE 226
            +N    +L++L    LG KIQ G+H   +D  +AM LY+R R +
Sbjct: 252 KTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQ 296


>AT2G48100.1 | Symbols:  | Exonuclease family protein |
           chr2:19671245-19672847 FORWARD LENGTH=344
          Length = 344

 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 10/165 (6%)

Query: 72  AVAMDCEMVGVGS-GNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLR 130
           A+A+DCEMVG G+ G       V LV+   NVI+   V+P+  V D+R +I+GL   DL+
Sbjct: 132 AMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLK 191

Query: 131 KGKDFWTVQKKVAELIKG--------RILVGHALSNDFKALLLSHPKKDIRDTSEYQPFL 182
            G     V+++V   + G         +LVGH L +D   L L +P   +RDT++Y P +
Sbjct: 192 DGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLM 251

Query: 183 NSN-SRIALRHLAAERLGVKIQTGEHCPIQDARAAMLLYQRNRKE 226
            +N    +L++L    LG KIQ G+H   +D  +AM LY+R R +
Sbjct: 252 KTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQ 296


>AT3G27970.1 | Symbols:  | Exonuclease family protein |
           chr3:10389609-10391544 FORWARD LENGTH=357
          Length = 357

 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 16/174 (9%)

Query: 72  AVAMDCEMVGVGS-GNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLR 130
            VA+ C+MVG GS G+     RV + ++  NVI+  +VKP   V  +R + +G+RP +LR
Sbjct: 135 VVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTGIRPENLR 194

Query: 131 KGKDFWTVQKKVAELI--------------KGRILVGHALSNDFKALLLSHPKKDIRDTS 176
                  VQ+K+ E +              K RILVGH L +D   L L +P   IRDT+
Sbjct: 195 DAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSMIRDTA 254

Query: 177 EYQPFL-NSNSRIALRHLAAERLGVKIQTGEHCPIQDARAAMLLYQRNRKEWEK 229
           +Y P +  S    +L++L    LG  +  G   P +D  A M LY R R +  K
Sbjct: 255 KYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYTRMRYQKHK 308


>AT5G40310.1 | Symbols:  | Exonuclease family protein |
           chr5:16113272-16115816 REVERSE LENGTH=348
          Length = 348

 Score =  103 bits (257), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 18/176 (10%)

Query: 72  AVAMDCEMVGVGS-GNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLR 130
            VA+ C+MVG GS G+     RV + ++  NV++  +VKP   V ++R +++G+RP +LR
Sbjct: 126 VVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRPENLR 185

Query: 131 KGKDFWTVQKKVAELI--------------KGRILVGHALSNDFKALLLSHPKKDIRDTS 176
                   Q+KV E +              K RILVGH L N   +L L +    IRDT+
Sbjct: 186 DAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMIRDTA 245

Query: 177 EYQPFLNSNSRI--ALRHLAAERLGVKIQTGEHCPIQDARAAMLLYQRNRKEWEKS 230
           EY P + S S++  +L++L    LG  I  G   P +D  A M LY R R +  ++
Sbjct: 246 EYPPLMKS-SKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRMRYQKHRA 300


>AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 |
           chr5:26824454-26828098 REVERSE LENGTH=782
          Length = 782

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 9/156 (5%)

Query: 70  TDAVAMDCEMVGVGSGNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDL 129
           T  +++DCEMV    G++ AL RV  V++   V+ D+FVKP + V+D++T I+G+   DL
Sbjct: 143 TRMLSIDCEMVTCEDGSQ-ALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDL 201

Query: 130 RKGK-DFWTVQKKVAELIK-GRILVGHALSNDFKALLLSHPKKDIRDTSEYQPFLNS--N 185
            +       +QKK+   +  G ILVGH L ND + L + H +  + DTS    F+++   
Sbjct: 202 ERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHAR--VIDTSYVFEFVDAPKT 259

Query: 186 SRIALRHLAAERLG--VKIQTGEHCPIQDARAAMLL 219
            R +L +L    LG  V++    H  + DA AAM L
Sbjct: 260 QRPSLNNLCKSVLGQEVRMDGAAHNCVHDAAAAMKL 295


>AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 |
           chr3:18578411-18580594 FORWARD LENGTH=409
          Length = 409

 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 88/156 (56%), Gaps = 9/156 (5%)

Query: 70  TDAVAMDCEMVGVGSGNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDL 129
           T+ VA+DCEMV    G +  L RV +V++   VI DEFVKP + VVD+RT I+G+   D+
Sbjct: 138 TNMVAVDCEMVLCEDGTE-GLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDI 196

Query: 130 RKGK-DFWTVQKKVAELIK-GRILVGHALSNDFKALLLSHPKKDIRDTSEYQPFLNSNS- 186
                    +Q+ +   +  G ILVGH+L+ D + L + HPK  + DT+    + N+   
Sbjct: 197 ENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPK--VIDTALVFKYPNTRKL 254

Query: 187 -RIALRHLAAERLGVKI-QTG-EHCPIQDARAAMLL 219
            R +L +L    LG ++ +TG  H  + DA AAM L
Sbjct: 255 RRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKL 290


>AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 |
           chr5:1636419-1638759 FORWARD LENGTH=466
          Length = 466

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 33/197 (16%)

Query: 34  EDTLKSILGKRKERPDDESNDSQINPLIPVNDDASLTDAVAMDCEMVGVGSGNKSALGRV 93
           ED +++ LGK+K  P                   +  + +A+DCEMV    G++ A+ RV
Sbjct: 123 EDWVRTGLGKKKMEP-------------------TKIEMIAIDCEMVLCEDGSE-AVVRV 162

Query: 94  TLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLRKGK-DFWTVQKKVAELI-KGRIL 151
             V++   VI DEFVKP + VVD+RT I+GL  +DL K       +Q+K+   I +  IL
Sbjct: 163 AAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEKATISVVDIQEKLLMFISEDTIL 222

Query: 152 VGHALSNDFKALLLSHPKKDIRDTSEYQPFLNSNSRIALR-------HLAAERLGVKIQT 204
           VG +L++D K L + H +  + DTS    +    +R  LR       +L    LG ++Q 
Sbjct: 223 VGQSLNHDLKVLKVDHAR--VIDTSLVFKYNYDGTRRPLRLKRPSLNYLCKCILGYEVQK 280

Query: 205 G--EHCPIQDARAAMLL 219
               H  + DA AAM L
Sbjct: 281 EGVPHNCVHDAEAAMKL 297


>AT5G05540.2 | Symbols: SDN2 | small RNA degrading nuclease 2 |
           chr5:1636419-1638256 FORWARD LENGTH=352
          Length = 352

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/197 (33%), Positives = 99/197 (50%), Gaps = 33/197 (16%)

Query: 34  EDTLKSILGKRKERPDDESNDSQINPLIPVNDDASLTDAVAMDCEMVGVGSGNKSALGRV 93
           ED +++ LGK+K  P                   +  + +A+DCEMV    G++ A+ RV
Sbjct: 123 EDWVRTGLGKKKMEP-------------------TKIEMIAIDCEMVLCEDGSE-AVVRV 162

Query: 94  TLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLRKGK-DFWTVQKKVAELI-KGRIL 151
             V++   VI DEFVKP + VVD+RT I+GL  +DL K       +Q+K+   I +  IL
Sbjct: 163 AAVDRDLKVILDEFVKPNQPVVDYRTFITGLTAQDLEKATISVVDIQEKLLMFISEDTIL 222

Query: 152 VGHALSNDFKALLLSHPKKDIRDTSEYQPFLNSNSRIALR-------HLAAERLGVKIQT 204
           VG +L++D K L + H +  + DTS    +    +R  LR       +L    LG ++Q 
Sbjct: 223 VGQSLNHDLKVLKVDHAR--VIDTSLVFKYNYDGTRRPLRLKRPSLNYLCKCILGYEVQK 280

Query: 205 G--EHCPIQDARAAMLL 219
               H  + DA AAM L
Sbjct: 281 EGVPHNCVHDAEAAMKL 297


>AT5G25800.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:8979761-8982724
           REVERSE LENGTH=567
          Length = 567

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 56  QINPLIPVNDDASLTDAVAMDCEMVGVGSGNKSALGRVTLVNKWGNVIYDEFVKPIERVV 115
           ++ P +P    +   + VA+DCEM     G +  L RVTLV+  G V+ D+ V P   + 
Sbjct: 199 ELTPTLPAPSGSCPPEIVALDCEMCITKEGLE--LTRVTLVDIQGQVLLDKLVMPTNPIT 256

Query: 116 DFRTKISGLRPRDLRK-GKDFWTVQKKVAELI-KGRILVGHALSNDFKALLLSHPKKDIR 173
           D+ T+ SG+    +         +Q++  +L+ K  ILVGH+L ND  +L +SH    + 
Sbjct: 257 DYNTRYSGITAVMMEGVTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISH--NLVI 314

Query: 174 DTSE-YQPFLNSNSRIALRHLAAERLGVKIQTGE--HCPIQDARAAM 217
           DT+  Y+     + +  LR LA + L  +IQ  E  H   +DA+AAM
Sbjct: 315 DTAVLYKHPHGRSYKTKLRILAKKFLAREIQESESGHDSAEDAKAAM 361


>AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 |
           chr5:26824454-26828098 REVERSE LENGTH=762
          Length = 762

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 21/152 (13%)

Query: 70  TDAVAMDCEMVGVGSGNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDL 129
           T  +++DCEMV    G++ AL RV  V++   V+ D+FVKP + V+D++T I+G+   DL
Sbjct: 143 TRMLSIDCEMVTCEDGSQ-ALVRVGAVDRDLKVVLDKFVKPDKPVIDYKTDITGVTAEDL 201

Query: 130 RKGK-DFWTVQKKVAELIK-GRILVGHALSNDFKALLLSHPKKDIRDTSEYQPFLNSNSR 187
            +       +QKK+   +  G ILVGH L ND + L + H +  + DTS           
Sbjct: 202 ERATLSVADIQKKLRRFLSVGTILVGHGLHNDLQVLRIDHAR--VIDTS----------- 248

Query: 188 IALRHLAAERLGVKIQTGEHCPIQDARAAMLL 219
                L  E   V++    H  + DA AAM L
Sbjct: 249 --YSVLGQE---VRMDGAAHNCVHDAAAAMKL 275


>AT2G48100.4 | Symbols:  | Exonuclease family protein |
           chr2:19671245-19672384 FORWARD LENGTH=242
          Length = 242

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 9/111 (8%)

Query: 72  AVAMDCEMVGVGS-GNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLR 130
           A+A+DCEMVG G+ G       V LV+   NVI+   V+P+  V D+R +I+GL   DL+
Sbjct: 132 AMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLK 191

Query: 131 KGKDFWTVQKKVAELIKG--------RILVGHALSNDFKALLLSHPKKDIR 173
            G     V+++V   + G         +LVGH L +D   L L +P   +R
Sbjct: 192 DGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLR 242


>AT3G50090.1 | Symbols:  | Exonuclease family protein |
           chr3:18575432-18577336 FORWARD LENGTH=322
          Length = 322

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 21/142 (14%)

Query: 73  VAMDCEMVGVGSGNKSALGRVTLVNKWGNVIYDEFVKPIERVVDFRTKISGLRPRDLRKG 132
           +A+DCEMV    G +  + RV  V++   VI DEFVKP + VVD+RT I+G+   D++K 
Sbjct: 76  LALDCEMVLCEDGTEGVV-RVGAVDRNLKVILDEFVKPHKPVVDYRTAITGVTAEDVQKA 134

Query: 133 K-DFWTVQKKVAELIK-GRILVGHALSNDFKALLLSHP-KKDIRDTSEYQPFLNSNSRIA 189
                 +Q+K+   +  G IL+ H +  D  +L+  +P  + +R     +P LN+     
Sbjct: 135 TLSLVDIQEKLRPFLSAGAILIDHPIVID-TSLVFKYPNSRKLR-----RPSLNT----- 183

Query: 190 LRHLAAERLGVKIQ---TGEHC 208
              L    LG ++Q      HC
Sbjct: 184 ---LCMSVLGYEVQKAGVSHHC 202