Miyakogusa Predicted Gene

Lj0g3v0254499.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0254499.1 Non Chatacterized Hit- tr|A3AP47|A3AP47_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,50,3e-19,Retrovirus zinc finger-like domains,Zinc finger,
CCHC-type; zinc finger,Zinc finger, CCHC-type; zf-C,CUFF.16777.1
         (170 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75560.2 | Symbols:  | zinc knuckle (CCHC-type) family protei...   173   5e-44
AT1G75560.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...   173   5e-44
AT4G36020.1 | Symbols: CSDP1 | cold shock domain protein 1 | chr...    56   1e-08

>AT1G75560.2 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr1:28371420-28372717 REVERSE LENGTH=257
          Length = 257

 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 116/173 (67%), Gaps = 22/173 (12%)

Query: 1   MASSCPNEGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCR 60
           +AS+C NEGICH+CGK GHRAR+CS      GDLRLCNNC+KQGH+A +CTN+KAC NCR
Sbjct: 104 VASNCSNEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDKACKNCR 163

Query: 61  KTGHLARDCPNDPICNLCNVSGHVARQCPKSNI-LGDRSSXXXXXXXXXXXXXXXXYRDV 119
            +GH+ARDC NDP+CN+C++SGHVAR CPK +    DR S                 RD 
Sbjct: 164 TSGHIARDCRNDPVCNICSISGHVARHCPKGDSNYSDRGS---------------RVRDG 208

Query: 120 VCRKCQQLGQMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMDRYAPNTRRY 170
             ++   L +MSRD  G   ++ICHNCGGRGH AYECPS R  DR     RRY
Sbjct: 209 GMQR-GGLSRMSRDREGVSAMIICHNCGGRGHRAYECPSARVADR---GFRRY 257


>AT1G75560.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr1:28371420-28372717 REVERSE LENGTH=257
          Length = 257

 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 116/173 (67%), Gaps = 22/173 (12%)

Query: 1   MASSCPNEGICHTCGKVGHRARECSAPPMPPGDLRLCNNCYKQGHIAVECTNEKACNNCR 60
           +AS+C NEGICH+CGK GHRAR+CS      GDLRLCNNC+KQGH+A +CTN+KAC NCR
Sbjct: 104 VASNCSNEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADCTNDKACKNCR 163

Query: 61  KTGHLARDCPNDPICNLCNVSGHVARQCPKSNI-LGDRSSXXXXXXXXXXXXXXXXYRDV 119
            +GH+ARDC NDP+CN+C++SGHVAR CPK +    DR S                 RD 
Sbjct: 164 TSGHIARDCRNDPVCNICSISGHVARHCPKGDSNYSDRGS---------------RVRDG 208

Query: 120 VCRKCQQLGQMSRDCMG--PLMICHNCGGRGHLAYECPSGRFMDRYAPNTRRY 170
             ++   L +MSRD  G   ++ICHNCGGRGH AYECPS R  DR     RRY
Sbjct: 209 GMQR-GGLSRMSRDREGVSAMIICHNCGGRGHRAYECPSARVADR---GFRRY 257


>AT4G36020.1 | Symbols: CSDP1 | cold shock domain protein 1 |
           chr4:17043443-17044342 REVERSE LENGTH=299
          Length = 299

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 63/158 (39%), Gaps = 45/158 (28%)

Query: 2   ASSCPNEGICHTCGKVGHRARECSAPPMPPGDLR--------LCNNCYKQGHIAVECTNE 53
           A+   N+G C+TCG VGH AR+C+   +  GD R         C  C   GH A +CT +
Sbjct: 158 ATKGGNDG-CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQK 216

Query: 54  KACNNCRK-------------TGHLARDCPN----DPICNLCNVSGHVARQCPKSNILGD 96
            A  N R               GH+ARDC         C  C  SGH+AR C +    G 
Sbjct: 217 VAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQRGSGGG 276

Query: 97  RSSXXXXXXXXXXXXXXXXYRDVVCRKCQQLGQMSRDC 134
            +                   D  C KC + G  +R+C
Sbjct: 277 GN-------------------DNACYKCGKEGHFAREC 295



 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 66/182 (36%), Gaps = 51/182 (28%)

Query: 11  CHTCGKVGHRARECSAPPMPPGDLRL------CNNCYKQGHIAVECTN------------ 52
           C+ CG++GH +++C       G  R       C NC   GH A +CT+            
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161

Query: 53  -EKACNNCRKTGHLARDCPNDPI---------------CNLCNVSGHVARQCPKSNILGD 96
               C  C   GH+ARDC    +               C  C   GH AR C +    G+
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGN 221

Query: 97  RSSXXXXXXXXXXXXXXXXYRDVVCRKCQQLGQMSRDCMG---PLMICHNCGGRGHLAYE 153
             S                     C  C  +G ++RDC     P   C+ CGG GHLA +
Sbjct: 222 VRSGGGGSG--------------TCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARD 267

Query: 154 CP 155
           C 
Sbjct: 268 CD 269



 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 59/161 (36%), Gaps = 52/161 (32%)

Query: 37  CNNCYKQGHIAVECTNEKA-------------CNNCRKTGHLARDCPN------------ 71
           C NC + GHI+ +C                  C NC  TGH ARDC +            
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161

Query: 72  -DPICNLCNVSGHVARQCPKSNIL-GDRSSXXXXXXXXXXXXXXXXYRDVVCRKCQQLGQ 129
            +  C  C   GHVAR C + ++  GD+                       C  C  +G 
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDG-------------CYTCGDVGH 208

Query: 130 MSRDCM------------GPLMICHNCGGRGHLAYECPSGR 158
            +RDC             G    C++CGG GH+A +C + R
Sbjct: 209 FARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKR 249