Miyakogusa Predicted Gene

Lj0g3v0254419.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0254419.1 tr|Q5JMD6|Q5JMD6_ORYSJ Os01g0971900 protein
OS=Oryza sativa subsp. japonica GN=P0518C01.18 PE=4
SV=1,55.88,4e-19,seg,NULL; PUMILIO 1, 2,NULL; RNA BINDING PROTEIN
PUMILIO-RELATED,NULL,CUFF.16729.1
         (172 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29200.1 | Symbols: APUM1, PUM1 | pumilio 1 | chr2:12549483-1...   141   2e-34
AT2G29140.1 | Symbols: APUM3, PUM3 | pumilio 3 | chr2:12531392-1...   140   3e-34
AT2G29190.2 | Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071...   132   1e-31
AT2G29190.1 | Symbols: APUM2, PUM2 | pumilio 2 | chr2:12544260-1...   132   1e-31
AT3G10360.1 | Symbols: APUM4, PUM4 | pumilio 4 | chr3:3211276-32...    72   2e-13

>AT2G29200.1 | Symbols: APUM1, PUM1 | pumilio 1 |
           chr2:12549483-12553185 REVERSE LENGTH=968
          Length = 968

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 109/177 (61%), Gaps = 17/177 (9%)

Query: 1   MLSELGRRPVLGGNE-GSFGDELDKEIGMLLREQRRQDV--DDHERELNRYRSGSAPPTV 57
           M+ ELGRRP+  GNE  SFGD+ +KEIG+LL EQ+R+ V  D+ ERELN +RSGSAPPTV
Sbjct: 1   MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLFRSGSAPPTV 60

Query: 58  EGSLNAVXXXXXXXXXXXXXXPFSEFPGANHENDFAS-EEELRSDPAYLQYYYSNVXXXX 116
           +GS++A               PF EF G N  N F   +EE R DPAYL YYY+N+    
Sbjct: 61  DGSVSA----AGGLFSGGGGAPFLEFGGVNKGNGFGGDDEEFRKDPAYLSYYYANMKLNP 116

Query: 117 XXXXXXXSKEDWRSAQRA----SVLGGIGDRRKVNRVDDSGARSLFATPPGFNSRKS 169
                  S+ED R AQR     +VLGG+GDRRKVN       RSLF+ PPGF   K+
Sbjct: 117 RLPPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVN-----DNRSLFSMPPGFEGEKT 168


>AT2G29140.1 | Symbols: APUM3, PUM3 | pumilio 3 |
           chr2:12531392-12535060 FORWARD LENGTH=964
          Length = 964

 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 109/176 (61%), Gaps = 17/176 (9%)

Query: 1   MLSELGRRPVLGGNE-GSFGDELDKEIGMLLREQRRQDV--DDHERELNRYRSGSAPPTV 57
           M+ ELGRRP+  GNE  SFGD+ +KEIG+LL EQ+R+ V  D+ ERELN YRSGSAPPTV
Sbjct: 2   MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTV 61

Query: 58  EGSLNAVXXXXXXXXXXXXXXPFSEFPGANHENDFAS-EEELRSDPAYLQYYYSNVXXXX 116
           +GSL+A                F EF G N  N F   +EE R DPAYL YYY+N+    
Sbjct: 62  DGSLSAAGGLFSGGGGAS----FLEFGGVNKGNGFGGDDEEFRKDPAYLSYYYANMKLNP 117

Query: 117 XXXXXXXSKEDWRSAQRA----SVLGGIGDRRKVNRVDDSGARSLFATPPGFNSRK 168
                  S+ED R AQR     +VLGG+GDRRKVN      +RSLF+ PPGF + K
Sbjct: 118 RLPPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVN-----DSRSLFSMPPGFEAGK 168


>AT2G29190.2 | Symbols: PUM2 | pumilio 2 | chr2:12544260-12548071
           REVERSE LENGTH=972
          Length = 972

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 112/176 (63%), Gaps = 17/176 (9%)

Query: 1   MLSELGRRPVLGGNE-GSFGDELDKEIGMLLREQRRQDV--DDHERELNRYRSGSAPPTV 57
           M+ ELGRRP+  GNE  SFGD+ +KEIG+LL EQ+R+ V  D+ ERELN YRSGSAPPTV
Sbjct: 1   MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTV 60

Query: 58  EGSLNAVXXXXXXXXXXXXXXPFSEFPGANHENDFAS-EEELRSDPAYLQYYYSNVXXXX 116
           +GS++A               PF EF G N  N F   +EE R DPAYL YYY+N+    
Sbjct: 61  DGSVSA----AGGLFSGGGGAPFLEFGGGNKGNGFGGDDEEFRKDPAYLSYYYANMKLNP 116

Query: 117 XXXXXXXSKEDWRSAQR----ASVLGGIGDRRKVNRVDDSGARSLFATPPGFNSRK 168
                  S+ED R AQR    ++VLGG+GDRRKVN      ++SLF+ PPGF+ RK
Sbjct: 117 RLPPPLMSREDLRVAQRLKGSSNVLGGVGDRRKVN-----DSQSLFSMPPGFDQRK 167


>AT2G29190.1 | Symbols: APUM2, PUM2 | pumilio 2 |
           chr2:12544260-12548071 REVERSE LENGTH=972
          Length = 972

 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 112/176 (63%), Gaps = 17/176 (9%)

Query: 1   MLSELGRRPVLGGNE-GSFGDELDKEIGMLLREQRRQDV--DDHERELNRYRSGSAPPTV 57
           M+ ELGRRP+  GNE  SFGD+ +KEIG+LL EQ+R+ V  D+ ERELN YRSGSAPPTV
Sbjct: 1   MIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTV 60

Query: 58  EGSLNAVXXXXXXXXXXXXXXPFSEFPGANHENDFAS-EEELRSDPAYLQYYYSNVXXXX 116
           +GS++A               PF EF G N  N F   +EE R DPAYL YYY+N+    
Sbjct: 61  DGSVSA----AGGLFSGGGGAPFLEFGGGNKGNGFGGDDEEFRKDPAYLSYYYANMKLNP 116

Query: 117 XXXXXXXSKEDWRSAQR----ASVLGGIGDRRKVNRVDDSGARSLFATPPGFNSRK 168
                  S+ED R AQR    ++VLGG+GDRRKVN      ++SLF+ PPGF+ RK
Sbjct: 117 RLPPPLMSREDLRVAQRLKGSSNVLGGVGDRRKVN-----DSQSLFSMPPGFDQRK 167


>AT3G10360.1 | Symbols: APUM4, PUM4 | pumilio 4 |
           chr3:3211276-3215144 REVERSE LENGTH=1003
          Length = 1003

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 81/162 (50%), Gaps = 12/162 (7%)

Query: 20  DELDKEIGMLLREQRRQDV--DDHERELNRYRSGSAPPTVEGSLNAVXXXXXXXXXXXXX 77
           D   +E+  LL++ R Q     + ER+++ +RSGSAPPTVEG L A+             
Sbjct: 26  DRFQRELESLLQQHRNQQSFGRERERDIDVHRSGSAPPTVEGLLRAMDNQYLNNNNSDHR 85

Query: 78  XP--FSEFPGANHENDFASEEELRSDPAYLQYYYSNVXXXXXXXXXXXSKEDWRSAQR-- 133
                S    +N   +  S++ELR  P YL YYYSN            S+EDWR AQR  
Sbjct: 86  DVGNISSITTSNGV-ELLSDDELRWHPEYLSYYYSNEHSNPRLPPPLLSREDWRVAQRFH 144

Query: 134 --ASVLGGIGD-RRKVNRVDDSGARSLFATPPGFNSRKSESE 172
              SV   +G+ R+K   VD+S   SLF+  PG    ++E++
Sbjct: 145 NSESVFDPVGEWRKKTVEVDNSS--SLFSVQPGVPVEQAEND 184