Miyakogusa Predicted Gene

Lj0g3v0253979.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0253979.1 Non Chatacterized Hit- tr|I3SMJ5|I3SMJ5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.48,0,Cullin_binding,Potentiating neddylation domain; seg,NULL;
DCUN1,Potentiating neddylation domain; SUB,CUFF.16665.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15860.2 | Symbols:  | Domain of unknown function (DUF298) | ...   269   9e-73
AT1G15860.1 | Symbols:  | Domain of unknown function (DUF298) | ...   269   9e-73
AT1G15860.3 | Symbols:  | Domain of unknown function (DUF298) | ...   262   1e-70
AT3G12760.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Defective-...    77   9e-15

>AT1G15860.2 | Symbols:  | Domain of unknown function (DUF298) |
           chr1:5455055-5456741 FORWARD LENGTH=227
          Length = 227

 Score =  269 bits (687), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 144/176 (81%)

Query: 17  SVNSSAADLFXXXXXXXXXXXXXXIDSLFYSYANGSSSLIDPEGIETLCADMEIAHTDVR 76
           S  S   DLF              ID LF  YAN SSSLIDPEGIE LC+++E++HTD+R
Sbjct: 13  STESVTTDLFRSASSKASNKEMDRIDHLFNQYANKSSSLIDPEGIEELCSNLEVSHTDIR 72

Query: 77  ILMLAWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYA 136
           ILMLAWKMKAE+QGYFT +EWRRGLKALRADT++KLKKALP+LEKEVRRPSNFADFY+YA
Sbjct: 73  ILMLAWKMKAEKQGYFTHEEWRRGLKALRADTINKLKKALPELEKEVRRPSNFADFYAYA 132

Query: 137 FQYCLTEEKQKSIDTESICELLALVLGSTFPAQVNLFVEYLKAQADYKVINMDQWM 192
           F YCLTEEKQKSID E+IC+LL +V+GSTF AQV+ FVEYLK Q DYKVINMDQWM
Sbjct: 133 FCYCLTEEKQKSIDIETICQLLEIVMGSTFRAQVDYFVEYLKIQNDYKVINMDQWM 188


>AT1G15860.1 | Symbols:  | Domain of unknown function (DUF298) |
           chr1:5455055-5456741 FORWARD LENGTH=227
          Length = 227

 Score =  269 bits (687), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 144/176 (81%)

Query: 17  SVNSSAADLFXXXXXXXXXXXXXXIDSLFYSYANGSSSLIDPEGIETLCADMEIAHTDVR 76
           S  S   DLF              ID LF  YAN SSSLIDPEGIE LC+++E++HTD+R
Sbjct: 13  STESVTTDLFRSASSKASNKEMDRIDHLFNQYANKSSSLIDPEGIEELCSNLEVSHTDIR 72

Query: 77  ILMLAWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYA 136
           ILMLAWKMKAE+QGYFT +EWRRGLKALRADT++KLKKALP+LEKEVRRPSNFADFY+YA
Sbjct: 73  ILMLAWKMKAEKQGYFTHEEWRRGLKALRADTINKLKKALPELEKEVRRPSNFADFYAYA 132

Query: 137 FQYCLTEEKQKSIDTESICELLALVLGSTFPAQVNLFVEYLKAQADYKVINMDQWM 192
           F YCLTEEKQKSID E+IC+LL +V+GSTF AQV+ FVEYLK Q DYKVINMDQWM
Sbjct: 133 FCYCLTEEKQKSIDIETICQLLEIVMGSTFRAQVDYFVEYLKIQNDYKVINMDQWM 188


>AT1G15860.3 | Symbols:  | Domain of unknown function (DUF298) |
           chr1:5455055-5456741 FORWARD LENGTH=236
          Length = 236

 Score =  262 bits (669), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/185 (68%), Positives = 144/185 (77%), Gaps = 9/185 (4%)

Query: 17  SVNSSAADLFXXXXXXXXXXXXXXIDSLFYSYANGSSSLIDPEGIETLCADMEIAHTDVR 76
           S  S   DLF              ID LF  YAN SSSLIDPEGIE LC+++E++HTD+R
Sbjct: 13  STESVTTDLFRSASSKASNKEMDRIDHLFNQYANKSSSLIDPEGIEELCSNLEVSHTDIR 72

Query: 77  ILMLAWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYA 136
           ILMLAWKMKAE+QGYFT +EWRRGLKALRADT++KLKKALP+LEKEVRRPSNFADFY+YA
Sbjct: 73  ILMLAWKMKAEKQGYFTHEEWRRGLKALRADTINKLKKALPELEKEVRRPSNFADFYAYA 132

Query: 137 FQYCLTEEKQKSIDTESICELLALVLGSTFPAQVNLFVEYLKA---------QADYKVIN 187
           F YCLTEEKQKSID E+IC+LL +V+GSTF AQV+ FVEYLK          Q DYKVIN
Sbjct: 133 FCYCLTEEKQKSIDIETICQLLEIVMGSTFRAQVDYFVEYLKVWITQKSHIIQNDYKVIN 192

Query: 188 MDQWM 192
           MDQWM
Sbjct: 193 MDQWM 197


>AT3G12760.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Defective-in-cullin neddylation protein
           (InterPro:IPR014764), Protein of unknown function DUF298
           (InterPro:IPR005176), UBA-like (InterPro:IPR009060);
           BEST Arabidopsis thaliana protein match is: Domain of
           unknown function (DUF298) (TAIR:AT1G15860.2); Has 857
           Blast hits to 855 proteins in 202 species: Archae - 0;
           Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139;
           Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
           | chr3:4054963-4056826 FORWARD LENGTH=250
          Length = 250

 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 2/151 (1%)

Query: 41  IDSLFYSYANGSSSLIDPEGIETLCADMEIAHTDVRILMLAWKMKAEEQGYFTLDEWRRG 100
           ++ L+  Y +  S +I  EGI  LC D+E+   D+  L+L+W M A     F+  E+  G
Sbjct: 60  LEELYNRYKDPYSDMILAEGISVLCNDLEVEPQDIVTLVLSWHMNAATACEFSRQEFISG 119

Query: 101 LKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYAFQYCLTEEKQKSIDTESICELLAL 160
           L+AL  D++ KL++ LP +  E++    F + Y++AF +   E+ QKS+  ++   +  L
Sbjct: 120 LQALGVDSIGKLQEKLPFMRSELKDEQKFHEIYNFAFGWA-KEKGQKSLALDTAIGMWQL 178

Query: 161 VLGSTFPAQVNLFVEYLKAQADYKVINMDQW 191
           +        V  + ++L+ + + K I+ D W
Sbjct: 179 LFAEREWPLVTHWCDFLQDRHN-KAISKDTW 208