Miyakogusa Predicted Gene
- Lj0g3v0253949.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0253949.1 Non Chatacterized Hit- tr|I1JEL5|I1JEL5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8679 PE=,89.15,0,WD40
repeat-like,WD40-repeat-containing domain; WD40,WD40 repeat; WD40
repeats,WD40 repeat; no descr,CUFF.16661.1
(128 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 207 1e-54
AT1G15850.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 183 3e-47
AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like supe... 55 1e-08
AT1G61210.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 53 4e-08
AT1G61210.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 53 4e-08
AT1G11160.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 53 4e-08
AT1G49910.1 | Symbols: BUB3.2 | Transducin/WD40 repeat-like supe... 51 2e-07
AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 50 5e-07
AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 50 5e-07
AT1G15440.1 | Symbols: PWP2, ATPWP2 | periodic tryptophan protei... 49 7e-07
AT1G15440.2 | Symbols: PWP2 | periodic tryptophan protein 2 | ch... 49 8e-07
AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 49 1e-06
AT5G08560.2 | Symbols: | transducin family protein / WD-40 repe... 48 2e-06
AT5G08560.1 | Symbols: | transducin family protein / WD-40 repe... 48 2e-06
AT5G67320.1 | Symbols: HOS15 | WD-40 repeat family protein | chr... 46 8e-06
>AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:30320809-30323543 REVERSE LENGTH=349
Length = 349
Score = 207 bits (528), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 114/131 (87%), Gaps = 3/131 (2%)
Query: 1 MSTFGA---ANTNPNKSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNGNV 57
M+TFGA AN+NPNKS+EV P+DS+SSL FSP+A+ LVATSWDNQVRCWEIS++G
Sbjct: 1 MATFGAPATANSNPNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGAS 60
Query: 58 VNTTPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDL 117
+ + PKASISHDQPVLCSAWKDDGTTVFSGGCDKQ KMWPLLSGGQPVTVAMH+ PI +
Sbjct: 61 LASAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAM 120
Query: 118 AWIPEISLLAT 128
AWIP ++LLAT
Sbjct: 121 AWIPGMNLLAT 131
>AT1G15850.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:5453245-5454088 REVERSE LENGTH=140
Length = 140
Score = 183 bits (464), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 87/132 (65%), Positives = 104/132 (78%), Gaps = 4/132 (3%)
Query: 1 MSTFG----AANTNPNKSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNGN 56
MST G ++ NPN S+E+ P +DS+SSL FSPKA+ LVATSWD QVRCWEI+++
Sbjct: 1 MSTSGDKATSSTNNPNNSYEITPPATDSISSLSFSPKADILVATSWDCQVRCWEITRSDG 60
Query: 57 VVNTTPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKD 116
+ + PK S+SHDQPVLCSAWKDDGTTVF+GGCDKQ KMWPLLSG QP TVAMHDAP
Sbjct: 61 SIASEPKVSMSHDQPVLCSAWKDDGTTVFTGGCDKQAKMWPLLSGAQPSTVAMHDAPFNQ 120
Query: 117 LAWIPEISLLAT 128
+AWIP ++LL T
Sbjct: 121 IAWIPGMNLLVT 132
>AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like
superfamily protein | chr3:6805798-6808374 FORWARD
LENGTH=340
Length = 340
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 11 PNKSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQ 70
P+ E++ PPSD +S+L FS ++ L+ +SWD +VR +++S N + K H
Sbjct: 6 PSAGRELSNPPSDGISNLRFSNNSDHLLVSSWDKRVRLYDVSTN------SLKGEFLHGG 59
Query: 71 PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAW 119
VL + DD + FS G D +V+ + + G+ + HD ++ + +
Sbjct: 60 AVLDCCFHDDFSG-FSVGADYKVRRI-VFNVGKEDILGTHDKAVRCVEY 106
>AT1G61210.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:22564785-22571555 FORWARD LENGTH=1181
Length = 1181
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 26 SSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDGTTVF 85
S++ F P FL + S D ++ W+I K G + + H + + + DG V
Sbjct: 104 SAVEFHPFGEFLASGSSDANLKIWDIRKKGCI-----QTYKGHSRGISTIRFTPDGRWVV 158
Query: 86 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIPEISLLAT 128
SGG D VK+W L +G H+ PI+ L + P LLAT
Sbjct: 159 SGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLEFLLAT 201
>AT1G61210.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:22564785-22571555 FORWARD LENGTH=1179
Length = 1179
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 26 SSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDGTTVF 85
S++ F P FL + S D ++ W+I K G + + H + + + DG V
Sbjct: 104 SAVEFHPFGEFLASGSSDANLKIWDIRKKGCI-----QTYKGHSRGISTIRFTPDGRWVV 158
Query: 86 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIPEISLLAT 128
SGG D VK+W L +G H+ PI+ L + P LLAT
Sbjct: 159 SGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLEFLLAT 201
>AT1G11160.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:3733406-3739363 FORWARD LENGTH=1021
Length = 1021
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 26 SSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDGTTVF 85
S++ F P FL + S D +R W+ K G + + H + + + DG V
Sbjct: 104 SAVEFHPFGEFLASGSSDTNLRVWDTRKKGCI-----QTYKGHTRGISTIEFSPDGRWVV 158
Query: 86 SGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIPEISLLAT 128
SGG D VK+W L +G H+ PI+ L + P LLAT
Sbjct: 159 SGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLEFLLAT 201
>AT1G49910.1 | Symbols: BUB3.2 | Transducin/WD40 repeat-like
superfamily protein | chr1:18479025-18481271 FORWARD
LENGTH=339
Length = 339
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 11 PNKSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQ 70
P E++ PPSD +S+L FS ++ L+ +SWD VR ++ NG+++ + H
Sbjct: 5 PAIGRELSNPPSDGISNLRFSNNSDHLLVSSWDKSVRLYD--ANGDLM----RGEFKHGG 58
Query: 71 PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAW 119
VL + DD ++ FS D +V+ +G + V + H+ P++ + +
Sbjct: 59 AVLDCCFHDD-SSGFSVCADTKVRRIDFNAGKEDV-LGTHEKPVRCVEY 105
>AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=836
Length = 836
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 27 SLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDGTTVFS 86
S+ F P F + S D ++ W+I K G + T K H + V + DG V S
Sbjct: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCI--HTYKG---HTRGVNVLRFTPDGRWVVS 160
Query: 87 GGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIPEISLLAT 128
GG D VK+W L +G H+ I+ L + P LLAT
Sbjct: 161 GGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLAT 202
>AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=837
Length = 837
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 27 SLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDGTTVFS 86
S+ F P F + S D ++ W+I K G + T K H + V + DG V S
Sbjct: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCI--HTYKG---HTRGVNVLRFTPDGRWVVS 160
Query: 87 GGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIPEISLLAT 128
GG D VK+W L +G H+ I+ L + P LLAT
Sbjct: 161 GGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLAT 202
>AT1G15440.1 | Symbols: PWP2, ATPWP2 | periodic tryptophan protein 2
| chr1:5306159-5309460 REVERSE LENGTH=900
Length = 900
Score = 49.3 bits (116), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 25 VSSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDGTTV 84
V L FSP L ++SWD VR W++ + V T H+ VL A++ DG +
Sbjct: 520 VHGLMFSPLTQLLASSSWDYTVRLWDVFASKGTVET-----FRHNHDVLTVAFRPDGKQL 574
Query: 85 FSGGCDKQVKMWPLLSG 101
S D Q+ W + G
Sbjct: 575 ASSTLDGQINFWDTIEG 591
>AT1G15440.2 | Symbols: PWP2 | periodic tryptophan protein 2 |
chr1:5306159-5309460 REVERSE LENGTH=860
Length = 860
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 25 VSSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDGTTV 84
V L FSP L ++SWD VR W++ + V T H+ VL A++ DG +
Sbjct: 480 VHGLMFSPLTQLLASSSWDYTVRLWDVFASKGTVET-----FRHNHDVLTVAFRPDGKQL 534
Query: 85 FSGGCDKQVKMWPLLSG 101
S D Q+ W + G
Sbjct: 535 ASSTLDGQINFWDTIEG 551
>AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:2701448-2706910 FORWARD LENGTH=839
Length = 839
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 27 SLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDDGTTVFS 86
S+ F P F + S D ++ W+I K G + T K H + V + DG + S
Sbjct: 106 SVNFHPFGEFFASGSLDTNLKIWDIRKKGCI--HTYKG---HTRGVNVLRFTPDGRWIVS 160
Query: 87 GGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIPEISLLAT 128
GG D VK+W L +G H+ I+ L + P LLAT
Sbjct: 161 GGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLAT 202
>AT5G08560.2 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:2771104-2773827 REVERSE LENGTH=589
Length = 589
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 11 PNKSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQ 70
P+++ ++ + +D V L FS +L ++S D WEIS +G++ + + H +
Sbjct: 263 PSQTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHI--SLKHTLVGHHK 320
Query: 71 PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSG 101
PV+ W D V + G ++ ++ W + SG
Sbjct: 321 PVIAILWSPDDRQVLTCGAEEVIRRWDVDSG 351
>AT5G08560.1 | Symbols: | transducin family protein / WD-40 repeat
family protein | chr5:2771104-2773827 REVERSE LENGTH=589
Length = 589
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 11 PNKSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQ 70
P+++ ++ + +D V L FS +L ++S D WEIS +G++ + + H +
Sbjct: 263 PSQTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHI--SLKHTLVGHHK 320
Query: 71 PVLCSAWKDDGTTVFSGGCDKQVKMWPLLSG 101
PV+ W D V + G ++ ++ W + SG
Sbjct: 321 PVIAILWSPDDRQVLTCGAEEVIRRWDVDSG 351
>AT5G67320.1 | Symbols: HOS15 | WD-40 repeat family protein |
chr5:26857268-26860974 FORWARD LENGTH=613
Length = 613
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 11 PNKSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISK------------NGNVV 58
PN + + + V + +SP A+ L + S D R W I + N ++
Sbjct: 254 PNSDVRILEGHTSEVCACAWSPSASLLASGSGDATARIWSIPEGSFKAVHTGRNINALIL 313
Query: 59 NTTPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLA 118
S + V W +GT + +G CD Q ++W L+G T++ H PI L
Sbjct: 314 KHAKGKSNEKSKDVTTLDWNGEGTLLATGSCDGQARIWT-LNGELISTLSKHKGPIFSLK 372
Query: 119 WIPEISLLAT 128
W + L T
Sbjct: 373 WNKKGDYLLT 382