Miyakogusa Predicted Gene
- Lj0g3v0253939.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0253939.1 Non Chatacterized Hit- tr|I1JEL5|I1JEL5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.8679 PE=,93.96,0,WD40
repeats,WD40 repeat; WD40,WD40 repeat; no description,WD40/YVTN
repeat-like-containing domain; ,CUFF.16660.1
(182 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 359 e-100
AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like supe... 135 1e-32
AT1G49910.1 | Symbols: BUB3.2 | Transducin/WD40 repeat-like supe... 135 2e-32
AT1G69400.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 70 7e-13
AT1G69400.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 48 5e-06
>AT1G80670.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:30320809-30323543 REVERSE LENGTH=349
Length = 349
Score = 359 bits (921), Expect = e-100, Method: Compositional matrix adjust.
Identities = 165/182 (90%), Positives = 175/182 (96%)
Query: 1 MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
MVVGTADRNL+VFNLQNPQTE+KRI SPLKYQTRCV AFPDQQGFLVGSIEGRVGVHHLD
Sbjct: 168 MVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLD 227
Query: 61 DAQQSKNFTFKCHRENNEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRC 120
D+QQSKNFTFKCHR+ N+IYSVNSLNFHPVH TFATAGSDGAFNFWDKDSKQRLKAMSRC
Sbjct: 228 DSQQSKNFTFKCHRDGNDIYSVNSLNFHPVHGTFATAGSDGAFNFWDKDSKQRLKAMSRC 287
Query: 121 SQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKPRTGATG 180
+QPIPCS+FN+DGSIYAYA CYDWSKGAENHNPATAK++IFLHLPQESEVK KPR GATG
Sbjct: 288 NQPIPCSSFNHDGSIYAYAACYDWSKGAENHNPATAKSSIFLHLPQESEVKAKPRVGATG 347
Query: 181 RK 182
RK
Sbjct: 348 RK 349
>AT3G19590.1 | Symbols: BUB3.1 | Transducin/WD40 repeat-like
superfamily protein | chr3:6805798-6808374 FORWARD
LENGTH=340
Length = 340
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 107/182 (58%), Gaps = 10/182 (5%)
Query: 1 MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
+VV TA R++ +++L+N +R S LKYQTRCV +P+ G+ + S+EGRV + D
Sbjct: 157 LVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD 216
Query: 61 --DAQQSKNFTFKCHRENNE----IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 114
+A Q+K + FKCHR++ +Y VNS+ FHP++ TFAT G DG N WD ++K+RL
Sbjct: 217 LSEAAQAKKYAFKCHRKSEAGRDIVYPVNSIAFHPIYGTFATGGCDGFVNIWDGNNKKRL 276
Query: 115 KAMSRCSQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKP 174
S+ I +F+ DG + A A Y + +G ++ P IF+ E EVK KP
Sbjct: 277 YQYSKYPTSISALSFSRDGQLLAVASSYTFEEGEKSQEPEA----IFVRSVNEIEVKPKP 332
Query: 175 RT 176
+
Sbjct: 333 KV 334
>AT1G49910.1 | Symbols: BUB3.2 | Transducin/WD40 repeat-like
superfamily protein | chr1:18479025-18481271 FORWARD
LENGTH=339
Length = 339
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 108/182 (59%), Gaps = 10/182 (5%)
Query: 1 MVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLD 60
+VV TA R++ +++L+N +R S LKYQTRCV +P+ G+ + S+EGRV + D
Sbjct: 156 LVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVSMEFFD 215
Query: 61 --DAQQSKNFTFKCHRENNE----IYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRL 114
+A Q+K + FKCHR++ + +Y VN++ FHP++ TFA+ G DG N WD ++K+RL
Sbjct: 216 LSEAAQAKKYAFKCHRKSEDGRDIVYPVNAIAFHPIYGTFASGGCDGFVNIWDGNNKKRL 275
Query: 115 KAMSRCSQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLHLPQESEVKGKP 174
S+ I +F+ DG + A A Y + +G + H P IF+ E EVK KP
Sbjct: 276 YQYSKYPTSIAALSFSRDGGLLAVASSYTFEEGDKPHEPDA----IFVRSVNEIEVKPKP 331
Query: 175 RT 176
+
Sbjct: 332 KV 333
>AT1G69400.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:26087027-26088806 FORWARD LENGTH=314
Length = 314
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 84/168 (50%), Gaps = 10/168 (5%)
Query: 2 VVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDD 61
+V D ++ +++L+N ++ S ++ RC+ + P +G+ VGS++GRV V +
Sbjct: 149 LVVCVDASMHIYDLRNLDEAFQSYASQVEVPIRCITSVPYSRGYAVGSVDGRVAVDFPNT 208
Query: 62 AQQSK-NFTFKCHRENN----EIYSVNSLNFHPV-HHTFATAGSDGAFNFWDKDSKQRLK 115
+ S+ ++F+CH ++ + +N++ F P TF T ++G W+ S++RL
Sbjct: 209 SCSSEIKYSFRCHPKSRNGRLDGVCINAIEFSPCGSGTFVTGDNEGYVISWNAKSRRRLN 268
Query: 116 AMSRCSQPIPCSAFNNDGSIYAYAVCYDWSKGAENHNPATAKTNIFLH 163
+ R S I AF++ G + A A + + E +F+H
Sbjct: 269 ELPRYSNSIASLAFDHTGELLAIASSHTYQDAKEKEEAP----QVFIH 312
>AT1G69400.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:26087027-26088422 FORWARD LENGTH=272
Length = 272
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 2 VVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDD 61
+V D ++ +++L+N ++ S ++ RC+ + P +G+ VGS++GRV V +
Sbjct: 149 LVVCVDASMHIYDLRNLDEAFQSYASQVEVPIRCITSVPYSRGYAVGSVDGRVAVDFPNT 208
Query: 62 AQQSK-NFTFKCHRENN----EIYSVNSLNFHP-----VHHTFA 95
+ S+ ++F+CH ++ + +N++ F P +HH
Sbjct: 209 SCSSEIKYSFRCHPKSRNGRLDGVCINAIEFSPWYMSLIHHLMV 252