Miyakogusa Predicted Gene

Lj0g3v0253839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0253839.1 Non Chatacterized Hit- tr|I3SPD0|I3SPD0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.48,0,TRAPP,Transport protein particle (TRAPP) component;
Ligand-binding domain in the NO signalling and G,CUFF.16690.1
         (194 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58030.1 | Symbols:  | Transport protein particle (TRAPP) com...   381   e-106

>AT5G58030.1 | Symbols:  | Transport protein particle (TRAPP)
           component | chr5:23487021-23488483 REVERSE LENGTH=195
          Length = 195

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/193 (94%), Positives = 192/193 (99%)

Query: 1   MIGVGKMKQYSNVLDKPLTKGKQEVSLSAFAFLFSELVQYNQTQVDNIGELERRLEDAGY 60
           MIGVGKMKQYSNVLDKPL+KGKQEVSL+AFAFLFSELVQYNQTQVDNI ELERRLEDAGY
Sbjct: 1   MIGVGKMKQYSNVLDKPLSKGKQEVSLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGY 60

Query: 61  AVGARVLELLCHREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120
           AVG+RVLELLC+REKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE
Sbjct: 61  AVGSRVLELLCNREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISE 120

Query: 121 KELLVNKFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPMEGQQRPRTTILI 180
           KELLVN+FISIPKDMGTFNCGAFVAGIV+GVLD+AGFPAVVTAHFVP+EGQQRPRTTILI
Sbjct: 121 KELLVNRFISIPKDMGTFNCGAFVAGIVKGVLDNAGFPAVVTAHFVPIEGQQRPRTTILI 180

Query: 181 KFAEEVLRREARL 193
           KFA+EVL+REARL
Sbjct: 181 KFADEVLKREARL 193