Miyakogusa Predicted Gene

Lj0g3v0253809.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0253809.1 Non Chatacterized Hit- tr|D8TQD6|D8TQD6_VOLCA
Putative uncharacterized protein OS=Volvox carteri GN=,27.36,5e-18,no
description,Armadillo-like helical; ARM repeat,Armadillo-type fold;
DUF2454,Protein of unknown fu,CUFF.16650.1
         (449 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39910.1 | Symbols:  | ARM repeat superfamily protein | chr2:...   394   e-110

>AT2G39910.1 | Symbols:  | ARM repeat superfamily protein |
           chr2:16660604-16662886 FORWARD LENGTH=436
          Length = 436

 Score =  394 bits (1012), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/427 (51%), Positives = 285/427 (66%), Gaps = 21/427 (4%)

Query: 5   FSSSSMLNDLLVRLSKPISESLLTTPYTPHQGSNVSIKAFIKPLLSFRNPNIHSS----- 59
            S+SS L+  L+RLS+PI+E L  T YTP + S VS K  +  LL    PN  SS     
Sbjct: 14  LSTSSDLHGRLLRLSEPIAEILRRTQYTPQESSKVSTKDILLSLL----PNTSSSRLANE 69

Query: 60  --IQDFXXXXXXXXXXXXXXXXXXXWIPNHLSSLATASFFEVSRAYLTVFD-DRNSRFLA 116
             I+                     WIP +LS +  ++F+E+SR   + F  + N+  L 
Sbjct: 70  ESIKSLALACALLASSRSSTHELLSWIPENLSVMGESTFWEISRDCFSDFSSNSNAEKLV 129

Query: 117 ELGLIGDVVPPPEKRLLLEMMPEVLPDLKDRIKESSIDKSDENNEFSAASARVPAVFAIL 176
           EL      V   EK   +EM+P VLP+LKD I++SS+ K  +  + SAA AR P  +AIL
Sbjct: 130 EL------VEDSEK---IEMLPIVLPELKDGIEKSSLGKGSDAEDVSAAMARTPVGYAIL 180

Query: 177 AAFQFRWFVIQVDYPHLGKLCGLVIPCALTAVDHWSPAVKGQGMITLTYLGRNVDAAELD 236
           AA Q RWFV QV  P+L K C LV+PCALTA+DHWSP VKGQGMIT  +L +NV + +L 
Sbjct: 181 AAHQLRWFVTQVKKPNLVKFCNLVVPCALTALDHWSPEVKGQGMITFVHLAKNVSSGDLG 240

Query: 237 RYKDVILDACCQNIASDDEIWHLVVEASVVLVTLTQKRNPRSPWFERMLNEMLSHLERQP 296
            Y DV+LDACCQNIASDDEIW  VVE SV+LVT     NPRSPW+E+++NEML HLERQP
Sbjct: 241 LYGDVVLDACCQNIASDDEIWIHVVELSVLLVTKIHPNNPRSPWYEKIMNEMLGHLERQP 300

Query: 297 RNKERRIAWLKSADPLFNGVGLMLLAHFRRIFPLFFQWMHADDDDTVILVLKCTFILLRL 356
           RNKERRI WL+  +PL N +GL LLAHFRRIFPLFFQWMH+DD +TV+LVL+    ++RL
Sbjct: 301 RNKERRITWLRFVEPLLNSLGLFLLAHFRRIFPLFFQWMHSDDAETVLLVLERLETVVRL 360

Query: 357 TWIRKSPYVVRLVDELVLVYKEAALRTAREGIRANTCQILILLQESKGMHFNVAWEKHRQ 416
           TWIR SP   RLVDELV +YKE+++R  R+ IR    +IL+LL++ KG+ F  AW ++++
Sbjct: 361 TWIRHSPVFPRLVDELVSLYKESSMRKDRDDIRPLILRILMLLRQCKGLRFESAWSQYQE 420

Query: 417 DPDLTTL 423
           DP+L+T+
Sbjct: 421 DPNLSTV 427