Miyakogusa Predicted Gene
- Lj0g3v0253729.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0253729.1 Non Chatacterized Hit- tr|B9RRM5|B9RRM5_RICCO
Spliceosome associated protein, putative OS=Ricinus
co,30.77,0.000002,seg,NULL; RRM,RNA recognition motif domain;
RNA-binding domain, RBD,NULL; RNA recognition motif,RNA ,CUFF.16648.1
(289 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 290 9e-79
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 92 4e-19
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 91 1e-18
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 88 6e-18
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 84 1e-16
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 84 1e-16
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 84 2e-16
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 80 2e-15
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 80 2e-15
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 80 2e-15
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 72 3e-13
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 72 3e-13
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 70 1e-12
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 70 2e-12
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 67 2e-11
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 67 2e-11
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 2e-11
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 65 8e-11
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 9e-11
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 64 1e-10
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 64 1e-10
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 64 1e-10
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 64 1e-10
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 64 1e-10
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 2e-10
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 62 4e-10
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 7e-10
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 61 7e-10
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 8e-10
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 8e-10
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 8e-10
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 61 1e-09
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 1e-09
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 1e-09
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 60 1e-09
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 60 1e-09
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 60 1e-09
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 60 2e-09
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 60 2e-09
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 59 3e-09
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 59 3e-09
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 59 3e-09
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 59 3e-09
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 59 3e-09
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 59 4e-09
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 59 4e-09
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 59 5e-09
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 59 5e-09
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 58 8e-09
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 58 9e-09
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 57 1e-08
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 57 2e-08
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 57 2e-08
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 57 2e-08
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 57 2e-08
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 56 2e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 55 6e-08
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 54 2e-07
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 7e-07
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 7e-07
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 8e-07
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 8e-07
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 8e-07
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 8e-07
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 50 2e-06
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 50 2e-06
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 3e-06
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 49 3e-06
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 49 3e-06
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 49 4e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 4e-06
AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 4e-06
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 49 5e-06
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 5e-06
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 49 6e-06
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 1e-05
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 290 bits (741), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 143/165 (86%), Positives = 150/165 (90%), Gaps = 8/165 (4%)
Query: 1 MIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
MIKL+GKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI +NPKIMRD
Sbjct: 88 MIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRD 147
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVL 120
PDTGNSRGFGFISYDSFEASD+AIE+M GQYL NRQITVSYAYKKDTKGERHGTPAER+L
Sbjct: 148 PDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLL 207
Query: 121 AASNPTAQKSRPHTLFASGPPTLAGAPQANGTIAAPVPPRPFANG 165
AA+NPTAQKSRPHTLFA GPP+ APQ NG PRPFANG
Sbjct: 208 AATNPTAQKSRPHTLFAMGPPS--SAPQVNGL------PRPFANG 244
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 84/131 (64%), Gaps = 4/131 (3%)
Query: 4 LYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
++G+P++VN A + D + N+F+G+L P+V + L+D+FSAF ++ ++M D
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNS-CSDARVMWDQ 183
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE-RHGTPAERVL 120
TG SRGFGF+S+ + + + +AI MNG+++ +RQI ++A K T GE +H + + V+
Sbjct: 184 KTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVV 243
Query: 121 AASNPTAQKSR 131
+N +++ R
Sbjct: 244 ELTNGSSEDGR 254
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 84/134 (62%), Gaps = 6/134 (4%)
Query: 4 LYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVT---NPKIM 58
++G+P++VN A + D + N+F+G+L P+V + L+D+FSAF + + ++M
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVM 184
Query: 59 RDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE-RHGTPAE 117
D TG SRGFGF+S+ + + + +AI MNG+++ +RQI ++A K T GE +H + +
Sbjct: 185 WDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGK 244
Query: 118 RVLAASNPTAQKSR 131
V+ +N +++ R
Sbjct: 245 SVVELTNGSSEDGR 258
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Query: 4 LYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
L+G+PI+VN A + D + N+F+G+L P+V + LY +FS F ++ ++M D
Sbjct: 121 LFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSS-CSDARVMWDQ 179
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE 110
TG SRGFGF+S+ + + + +AI MNG++L +RQI ++A K T G+
Sbjct: 180 KTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGD 228
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 2 IKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
I LYGKPIRV + +D GA N+FI NLD +D K L+DTFS+FG IV+ K+ D
Sbjct: 100 IPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC-KVAVD 158
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITV 99
+G S+G+GF+ Y + E++ AIE +NG L ++Q+ V
Sbjct: 159 -SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 65/105 (61%), Gaps = 4/105 (3%)
Query: 9 IRVNKASQDKKSLD--VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNS 66
+RV K++ D +NL++ NLDP + ++ L + FS FG VT+ K+MRDP+ G S
Sbjct: 300 LRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGT-VTSSKVMRDPN-GTS 357
Query: 67 RGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 111
+G GF+++ + E + A+ ++G+ + ++ + V+ A +K+ + R
Sbjct: 358 KGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 402
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
+L++G+LD +V + L+D F G +VT ++ RD T S G+G++++ + + + AI+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVT-VRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 86 AMNGQYLCNRQITVSYAYK 104
+N L + I V Y+++
Sbjct: 96 ELNYIPLYGKPIRVMYSHR 114
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Query: 4 LYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
L+G+PI+VN A + D + N+F+G+L P+V + +L+ FS + ++ ++M D
Sbjct: 116 LFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPT-CSDARVMWDQ 174
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE 110
TG SRGFGF+S+ + + + +AI+ + G++L +RQI ++A K T GE
Sbjct: 175 KTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGE 223
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Query: 4 LYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
L+G+PI+VN A + D + N+F+G+L P+V + +L+ FS + ++ ++M D
Sbjct: 116 LFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPT-CSDARVMWDQ 174
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE 110
TG SRGFGF+S+ + + + +AI+ + G++L +RQI ++A K T GE
Sbjct: 175 KTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGE 223
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Query: 4 LYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 62
L+ +PIR+ +++D + L N+FI NLD +D K L++TFS+FG I++ K+ D
Sbjct: 114 LFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSC-KVAMDV- 171
Query: 63 TGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAER 118
TG S+G+GF+ ++ E++ +AI+ +NG + ++Q+ V + ++ + TP R
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPR 227
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 62/99 (62%), Gaps = 7/99 (7%)
Query: 10 RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGF 69
R+N+ + + GANL++ NLD VD++ L + FS +G VT+ K+M +P G SRGF
Sbjct: 322 RINRFEKSQ-----GANLYLKNLDDSVDDEKLKEMFSEYGN-VTSSKVMLNPQ-GMSRGF 374
Query: 70 GFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 108
GF++Y + E + A+ MNG+ + + + ++ A +K+ +
Sbjct: 375 GFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDR 413
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
N+++ NL ++ E L TF FGVI ++ +MRD +GNSR FGF++++ EA+ SA+E
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVI-SSAVVMRD-QSGNSRCFGFVNFECTEAAASAVE 287
Query: 86 AMNGQYLCNRQITVSYAYKKDTKGE--RHGTPAERV 119
MNG L + + V A KK + E R ER+
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERI 323
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
Query: 2 IKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
+ L G+ IRV + +D G N+FI NLD +D K L++TFSAFG I++ K+ D
Sbjct: 109 MALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSC-KVAVD 167
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVS---YAYKKDTKGER 111
P +G S+G+GF+ YD+ EA+ AI+ +NG L ++Q+ V + ++D GE+
Sbjct: 168 P-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 220
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
G+NL++ NLD V + L + F+ FG I T+ K+MRDP +G SRG GF+++ + E + A
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTI-TSCKVMRDP-SGVSRGSGFVAFSTPEEATRA 383
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPP 141
I MNG+ + + + V+ A +K+ + R ++ + P A R GPP
Sbjct: 384 ITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPP 441
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
N+++ NL + ++ L F FGV T+ IMRD + G S+GFGF+++++ + + A++
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGV-TTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVD 282
Query: 86 AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLF 136
A+NG+ +++ V A KK ER ++ + A KS+ L+
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKS---ERETELKQKFEQSLKEAADKSQGSNLY 330
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
Query: 2 IKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
+ L G+ IRV + +D G N+FI NLD +D K L++TFSAFG I++ K+ D
Sbjct: 109 MALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSC-KVAVD 167
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVS---YAYKKDTKGER 111
P +G S+G+GF+ YD+ EA+ AI+ +NG L ++Q+ V + ++D GE+
Sbjct: 168 P-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEK 220
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
G+NL++ NLD V + L + F+ FG I T+ K+MRDP +G SRG GF+++ + E + A
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTI-TSCKVMRDP-SGVSRGSGFVAFSTPEEATRA 383
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPP 141
I MNG+ + + + V+ A +K+ + R ++ + P A R GPP
Sbjct: 384 ITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPP 441
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
N+++ NL + ++ L F FGV T+ IMRD + G S+GFGF+++++ + + A++
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGV-TTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVD 282
Query: 86 AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLF 136
A+NG+ +++ V A KK ER ++ + A KS+ L+
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKS---ERETELKQKFEQSLKEAADKSQGSNLY 330
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 7 KPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN 65
+PIR+ +++D + L N+FI NLD +D K LY+TFS+FG I++ K+ D G
Sbjct: 127 RPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC-KVAMDV-VGR 184
Query: 66 SRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 108
S+G+GF+ ++ E + +AI+ +NG L ++Q+ V + ++ +
Sbjct: 185 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 227
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
G+NL++ NLD V+++ L + FS +G VT+ K+M + G SRGFGF++Y + E + A
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGN-VTSCKVMMN-SQGLSRGFGFVAYSNPEEALLA 398
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTK 108
++ MNG+ + + + V+ A +K+ +
Sbjct: 399 MKEMNGKMIGRKPLYVALAQRKEER 423
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 16 QDKKSLDVGA-----NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 70
QD+ + GA N+++ NL ++ + L TF +G I ++ +M+D +GNSR FG
Sbjct: 225 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI-SSAVVMKD-QSGNSRSFG 282
Query: 71 FISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE--RHGTPAERV 119
F+++ S EA+ A+E MNG L + V A KK + E R ER+
Sbjct: 283 FVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERI 333
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 7 KPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN 65
+PIR+ +++D + L N+FI NLD +D K LY+TFS+FG I++ K+ D G
Sbjct: 127 RPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC-KVAMDV-VGR 184
Query: 66 SRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 108
S+G+GF+ ++ E + +AI+ +NG L ++Q+ V + ++ +
Sbjct: 185 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 227
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
G+NL++ NLD V+++ L + FS +G VT+ K+M + G SRGFGF++Y + E + A
Sbjct: 341 GSNLYLKNLDDSVNDEKLKEMFSEYGN-VTSCKVMMN-SQGLSRGFGFVAYSNPEEALLA 398
Query: 84 IEAMNGQYLCNRQITVSYAYKKDTK 108
++ MNG+ + + + V+ A +K+ +
Sbjct: 399 MKEMNGKMIGRKPLYVALAQRKEER 423
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 16 QDKKSLDVGA-----NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 70
QD+ + GA N+++ NL ++ + L TF +G I ++ +M+D +GNSR FG
Sbjct: 225 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI-SSAVVMKD-QSGNSRSFG 282
Query: 71 FISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE--RHGTPAERV 119
F+++ S EA+ A+E MNG L + V A KK + E R ER+
Sbjct: 283 FVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERI 333
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 7 KPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
+P R+N AS +K++++ G +L F+G+L PDV + LL++TFS V + K++ D
Sbjct: 179 QPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDS 238
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLA 121
+TG S+G+GF+ + A+ MNG Y NRQ+ V A K + ++ V+
Sbjct: 239 NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVIL 298
Query: 122 A 122
A
Sbjct: 299 A 299
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Query: 4 LYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 62
L GK IR+ +S+D + G NLF+ NLD VD K L++ FS G IV+ K+ D
Sbjct: 112 LNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSC-KVATD-H 169
Query: 63 TGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 108
G SRG+GF+ +D+ +++ +AIE +NG+ L ++QI V +K+ +
Sbjct: 170 MGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEER 215
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 10 RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGF 69
R + S D + G NL++ NLD V ++ L + F+ FG I T+ K+MRDP +G S+G
Sbjct: 313 RYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTI-TSCKVMRDP-SGTSKGS 370
Query: 70 GFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 108
GF+++ + + + MNG+ + + + V+ A +K+ +
Sbjct: 371 GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEER 409
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
+L++G+LD +V + LYD F+ +V+ ++ RD T S G+G+++Y + + ++ A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVS-VRVCRDAATNTSLGYGYVNYSNTDDAEKAM 104
Query: 85 EAMNGQYLCNRQITVSY 101
+ +N YL + I ++Y
Sbjct: 105 QKLNYSYLNGKMIRITY 121
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
N+++ NL + L TF +G I ++ +MRD D G SR FGF+++++ E + A+E
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSI-SSAVVMRDGD-GKSRCFGFVNFENPEDAARAVE 283
Query: 86 AMNGQYLCNRQITVSYAYKKDTK 108
A+NG+ +++ V A KK +
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKSER 306
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
+ LFIG + +DE L + F+ +G +V + +++ D +TG SRGFGF+++ S EA+ SAI
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVV-DTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 85 EAMNGQYLCNRQITVSYA 102
+A++G+ L R + V+YA
Sbjct: 99 QALDGRDLHGRVVKVNYA 116
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
L+IG L P DE L D FS+F VT ++M + TG SRG+GF+++ S ++++SAI A
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNG-VTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 87 MNGQYLCNRQITVSYA 102
MNGQ L I+V+ A
Sbjct: 92 MNGQELNGFNISVNVA 107
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 3/97 (3%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
G+ +F+G L P+V ++ L FS FG I+ + +IM + DTG SRGFGFI++ A D +
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAFSRFGDIL-DCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 84 IEAMNGQYLCNRQITVSYAYKK--DTKGERHGTPAER 118
I M+G+ +R I+V+ A K GE HG+ R
Sbjct: 65 IREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGR 101
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
+ +F+G L P D +LL + F +FG IV + ++ D ++G SRGFGF++YDS E +++A+
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIV-DAVVVLDRESGLSRGFGFVTYDSIEVANNAM 94
Query: 85 EAMNGQYLCNRQITV 99
+AM + L R I V
Sbjct: 95 QAMQNKELDGRIIGV 109
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 9 IRVNKAS-QDKKSLDVGAN--LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN 65
R+N AS + +D G + +F+G+L PDV + LL +TF V K++ DP TG
Sbjct: 97 FRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGR 156
Query: 66 SRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP 125
S+G+GF+ + + A+ MNG Y R + +S A K G + + V + P
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVP 216
Query: 126 TA 127
+A
Sbjct: 217 SA 218
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 23 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDS 82
+ + LF+G L D+ L F++FG VT ++ D +TG SRGFGF+S+ +++++
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGE-VTEATVIADRETGRSRGFGFVSFSCEDSANN 91
Query: 83 AIEAMNGQYLCNRQITVSYAYKKDT 107
AI+ M+G+ L RQI V+ A ++ +
Sbjct: 92 AIKEMDGKELNGRQIRVNLATERSS 116
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 23 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDS 82
+ + LF+G L D+ L F++FG VT ++ D +TG SRGFGF+S+ +++++
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGE-VTEATVIADRETGRSRGFGFVSFSCEDSANN 91
Query: 83 AIEAMNGQYLCNRQITVSYAYKKDT 107
AI+ M+G+ L RQI V+ A ++ +
Sbjct: 92 AIKEMDGKELNGRQIRVNLATERSS 116
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 20 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEA 79
S DV F+G L D++ L F+ +G ++ + KI+ D +TG SRGFGF+++ +A
Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVI-DSKIINDRETGRSRGFGFVTFKDEKA 61
Query: 80 SDSAIEAMNGQYLCNRQITVSYA 102
AIE MNGQ L R ITV+ A
Sbjct: 62 MKDAIEGMNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 20 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEA 79
S DV F+G L D++ L F+ +G ++ + KI+ D +TG SRGFGF+++ +A
Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVI-DSKIINDRETGRSRGFGFVTFKDEKA 61
Query: 80 SDSAIEAMNGQYLCNRQITVSYA 102
AIE MNGQ L R ITV+ A
Sbjct: 62 MKDAIEGMNGQDLDGRSITVNEA 84
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 55/84 (65%), Gaps = 3/84 (3%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
GANLFI N+ + ++ L F +FG++++ K+ D TG S+ FGF+SYDS A+ +A
Sbjct: 348 GANLFIYNIPREFGDQELAAAFQSFGIVLS-AKVFVDKATGVSKCFGFVSYDSQAAAQNA 406
Query: 84 IEAMNGQYLCNRQITVSYAYKKDT 107
I+ MNG++L +++ V K+D+
Sbjct: 407 IDMMNGRHLGGKKLKVQ--LKRDS 428
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 9 IRVNKAS-QDKKSLDVGAN--LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN 65
R+N AS + +D G + +F+G+L PDV + LL +TF V K++ DP TG
Sbjct: 97 FRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGR 156
Query: 66 SRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKG 109
S+G+GF+ + + A+ MNG Y R + +S A K G
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVG 200
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 7 KPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
+P R+N AS +K++ + G +L F+G+L PDV + +L +TF+ V K++ D
Sbjct: 190 QPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDS 249
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK--GERHGTPA 116
+TG S+G+GF+ + A+ MNG + +RQ+ V A K G+++G+ A
Sbjct: 250 NTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQA 306
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
GANLFI N+ + +++ L TF FG +++ K+ D TG S+ FGFISYDS A+ +A
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLS-AKVFVDKATGISKCFGFISYDSQAAAQNA 387
Query: 84 IEAMNGQYLCNRQITVS 100
I MNG L +++ V
Sbjct: 388 INTMNGCQLSGKKLKVQ 404
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 61.2 bits (147), Expect = 7e-10, Method: Composition-based stats.
Identities = 33/82 (40%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 28 FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAM 87
F+G L +++ L TFS FG ++ + KI+ D ++G SRGFGF+++ +A AIE M
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVI-DSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 88 NGQYLCNRQITVSYAYKKDTKG 109
NG+ L R ITV+ A + + G
Sbjct: 68 NGKELDGRVITVNEAQSRGSGG 89
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
+ +F+G L DV E+ L TF +G I T +IM DTG RGFGFI++ +D AI
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKI-TECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 85 EAMNGQYLCNRQITVSYA 102
+ M+G+ L N+ I+V+ A
Sbjct: 71 KHMHGRELGNKVISVNKA 88
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
+ +F+G L DV E+ L TF +G I T +IM DTG RGFGFI++ +D AI
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKI-TECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 85 EAMNGQYLCNRQITVSYA 102
+ M+G+ L N+ I+V+ A
Sbjct: 71 KHMHGRELGNKVISVNKA 88
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
GANLFI N+ + +++ L TF FG +++ K+ D TG S+ FGFISYDS A+ +A
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLS-AKVFVDKATGISKCFGFISYDSQAAAQNA 396
Query: 84 IEAMNGQYLCNRQITV 99
I MNG L +++ V
Sbjct: 397 INTMNGCQLSGKKLKV 412
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 2 IKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
KL GKP+R+ + +D + G N+F+ NLD +D K L D FSAFG +++ K+ RD
Sbjct: 7 CKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC-KVARD 65
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVS 100
+G S+G+GF+ + S + +A NG + N+ I V
Sbjct: 66 A-SGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVC 104
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 24 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 83
G NL++ NLD VD L + FS FG I T+ K+M + G S+G GF+ + + E + A
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTI-TSCKVMVHSN-GISKGVGFVEFSTSEEASKA 279
Query: 84 IEAMNGQYLCNRQITVSYAYKKD 106
+ MNG+ + N+ I VS A K+
Sbjct: 280 MLKMNGKMVGNKPIYVSLAQCKE 302
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Query: 11 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 70
V++ DK V N+++ NL + L F FG I T+ +M+D + G SR FG
Sbjct: 107 VSRGQWDKSR--VFTNVYVKNLVETATDADLKRLFGEFGEI-TSAVVMKDGE-GKSRRFG 162
Query: 71 FISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE 110
F++++ EA+ +AIE MNG + +++ V A +K + E
Sbjct: 163 FVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTE 202
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
LFIG L VDE+ L D FS+FG V +I D +G SRGFGF+ + + SA +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGE-VAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100
Query: 86 AMNGQYLCNRQITVSYAYKK 105
AM+G+ L R + +S+A ++
Sbjct: 101 AMDGKGLLGRPLRISFALER 120
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 23 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDS 82
+ +++GNL P + +L + FS +G +V + +MRD T SRGFGF++Y S +++
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVV-DAIVMRDRYTDRSRGFGFVTYSSHSEAEA 59
Query: 83 AIEAMNGQYLCNRQITV 99
A+ M+G+ L R+++V
Sbjct: 60 AVSGMDGKELNGRRVSV 76
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
NL+IG L P +++ L + FS+FG IV K+++D TG S+G+GF+ Y + +++A++
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMA-KVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 86 AMNGQYLCNRQITVSYAYK 104
AMNG R + V A K
Sbjct: 540 AMNGYRFEGRTLAVRIAGK 558
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
NL+IG L P +++ L + FS+FG IV K+++D TG S+G+GF+ Y + +++A++
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMA-KVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 86 AMNGQYLCNRQITVSYAYK 104
AMNG R + V A K
Sbjct: 540 AMNGYRFEGRTLAVRIAGK 558
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
NL+IG L P +++ L + FS+FG IV K+++D TG S+G+GF+ Y + +++A++
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVMA-KVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 86 AMNGQYLCNRQITVSYAYK 104
AMNG R + V A K
Sbjct: 540 AMNGYRFEGRTLAVRIAGK 558
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 7 KPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
+P R+N AS +K+ + G +L F+G+L PDV + LL++TFS V K++ D
Sbjct: 174 QPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDA 233
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKG 109
+TG S+G+GF+ + A+ MNG +R + + A + T G
Sbjct: 234 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNG 281
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+++GNL VD+ L FS G +V +++ D D+G S+GFGF++YDS + +AI++
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVV-EARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 87 MNGQYLCNRQITVSYA 102
++G L RQI VS A
Sbjct: 265 LDGADLDGRQIRVSEA 280
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 7 KPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
+P R+N AS +K+ + G +L F+G+L PDV + LL++TFS V K++ D
Sbjct: 174 QPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDA 233
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKG 109
+TG S+G+GF+ + A+ MNG +R + + A + T G
Sbjct: 234 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNG 281
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFIG L D+ L D F+ FG +V + K++ D +TG SRGFGF++++ A+ +AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVV-DAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 87 MNGQYLCNRQITVSYAYKK 105
M+G+ L R I V+ A +
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFIG L D+ L D F+ FG +V + K++ D +TG SRGFGF++++ A+ +AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVV-DAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 87 MNGQYLCNRQITVSYAYKK 105
M+G+ L R I V+ A +
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFIG L D+ L D F+ FG +V + K++ D +TG SRGFGF++++ A+ +AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVV-DAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 87 MNGQYLCNRQITVSYAYKK 105
M+G+ L R I V+ A +
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 22 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 81
+V F+G L +++ L TFS FG ++ + KI+ D ++G SRGFGF+++ +A
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVI-DSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 82 SAIEAMNGQYLCNRQITVSYA 102
AIE MNG+ L R ITV+ A
Sbjct: 62 DAIEEMNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 22 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 81
+V F+G L +++ L TFS FG ++ + KI+ D ++G SRGFGF+++ +A
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVI-DSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 82 SAIEAMNGQYLCNRQITVSYA 102
AIE MNG+ L R ITV+ A
Sbjct: 62 DAIEEMNGKELDGRVITVNEA 82
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 23 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDS 82
V + LFIG L E+ L + FS G +V +I+ D + S+GFGF+++ S + +
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVV-EAQIVMDRVSDRSKGFGFVTFASADEAQK 90
Query: 83 AIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAER------VLAASNPT 126
A+ NGQ L R I V YA K + G G P R V+AA+ T
Sbjct: 91 ALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDPAVIAATRTT 140
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFIG L D+ L D F+ FG +V + K++ D +TG SRGFGF++++ A+ +AI
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVV-DAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 87 MNGQYLCNRQITVS 100
M+G+ L R I V+
Sbjct: 96 MDGKELNGRHIRVN 109
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 8/111 (7%)
Query: 2 IKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 54
++ G+ + VN+A+ + + D +++GNL DVD L FS G +V +
Sbjct: 177 FEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVV-D 235
Query: 55 PKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 105
+++ D +TG SRGFGF+ + + AI A++GQ L R I V+ A ++
Sbjct: 236 ARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
A LF+GNL DVD + L F G + + +++ + DT SRGFGF++ + E ++ A+
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEIS-EVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 85 EAMNGQYLCNRQITVSYAYKKDTKGERH 112
E N + R++TV+ A + ++ ER
Sbjct: 172 EKFNSFEVNGRRLTVNRAAPRGSRPERQ 199
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
FIG L ++ L D F +G +V K++ D +G SRGFGFI++D +A D AI A
Sbjct: 9 CFIGGLAWTTSDRGLRDAFEKYGHLV-EAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 87 MNGQYLCNRQITVSYA 102
MNG L R ITV A
Sbjct: 68 MNGMDLDGRTITVDKA 83
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 4 LYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 56
L G+ + VNKA+ + + + +++GNL DVD L FS G +V +
Sbjct: 216 LNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVV-EAR 274
Query: 57 IMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 105
++ D +TG SRGFGF++ + + AI A++GQ L R I V+ A ++
Sbjct: 275 VVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
A LF+GNL DV+ + L F G + +++ + +T SRGFGF++ S + +++A+
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEI-AEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 85 EAMNGQYLCNRQITVSYAYKKDTKGER 111
E N L R +TV+ A + ++ ER
Sbjct: 209 EKFNRYDLNGRLLTVNKAAPRGSRPER 235
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 5/108 (4%)
Query: 7 KPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
+P R+N AS +K+ + G +L F+G+L PDV + LL++TFS V K++ D
Sbjct: 176 QPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDA 235
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKG 109
+TG S+G+GF+ + A+ MNG +R + + A + T G
Sbjct: 236 NTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNG 283
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G+L PDV + +L +TF A V K++ D TG S+G+GF+ + A+
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 87 MNGQYLCNRQITVSYAYKK 105
MNGQY +R + A K
Sbjct: 235 MNGQYCSSRPMRTGPAANK 253
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
L++GNL VD+ L + F+ G +V +++ D D+G S+GFGF++ S + AI +
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVV-EARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 87 MNGQYLCNRQITVSYAYKKDTKGE 110
+NG L RQI VS A + +G+
Sbjct: 339 LNGADLDGRQIRVSEAEARPPRGQ 362
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
L++GNL VD+ L + F+ G +V +++ D D+G S+GFGF++ S + AI +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVV-EARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 87 MNGQYLCNRQITVSYAYKKDTKGE 110
+NG L RQI VS A + +G+
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRGQ 341
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
L++GNL VD+ L + F+ G +V +++ D D+G S+GFGF++ S + AI +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVV-EARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 87 MNGQYLCNRQITVSYAYKKDTKGE 110
+NG L RQI VS A + +G+
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRGQ 341
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
L++GNL VD+ L + F+ G +V +++ D D+G S+GFGF++ S + AI +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVV-EARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 87 MNGQYLCNRQITVSYAYKKDTKGE 110
+NG L RQI VS A + +G+
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRGQ 341
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 8 PIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNS 66
P++V A +++ + + LF+G+L+ EK + + F FG V + +MRD + S
Sbjct: 118 PVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVEDVYLMRD-EYRQS 175
Query: 67 RGFGFISYDSFEASDSAIEAMNGQYL---CNRQITVSYAYKKDTKGERHGTPAERVLAAS 123
RG GF+ Y S E + +AI+ +NG Y CN+ + V +A K K A V S
Sbjct: 176 RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGS 235
Query: 124 NPTAQKSRPH 133
P Q S P
Sbjct: 236 GPRFQASGPR 245
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 66/112 (58%), Gaps = 7/112 (6%)
Query: 4 LYGKPIRVNK-ASQDKKSLDVG----ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIM 58
+YGK + V K ++D+++ G N+++ NL V + L+ FS +G V++ +M
Sbjct: 176 VYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT-VSSVVVM 234
Query: 59 RDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE 110
RD G SRGFGF+++ + E + A+E++ G L ++++ V A KKD + E
Sbjct: 235 RD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERRE 285
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 4 LYGKPIRVNKASQD---KKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 59
L GK +R+ + +D ++ G ANL++ NLD + L F FG I++ +
Sbjct: 87 LKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVV-- 144
Query: 60 DPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERV 119
+ G S+GFGF+ +D+ +++ SA A++G + +++ V+ KD + G
Sbjct: 145 -EENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTN 203
Query: 120 LAASN--PTAQKSRPHTLFA 137
+ N T HTLF+
Sbjct: 204 VYVKNLIETVTDDCLHTLFS 223
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
+NL++ NL ++E L + F +G IV+ K+M + G S+GFGF+ + + E S A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVS-AKVM-CHENGRSKGFGFVCFSNCEESKQAK 361
Query: 85 EAMNGQYLCNRQITVSYAYKKDTKGER 111
+NG + + I V A +K+ + +R
Sbjct: 362 RYLNGFLVDGKPIVVRVAERKEDRIKR 388
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 8 PIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNS 66
P++V A +++ + + LF+G+L+ EK + + F FG V + +MRD + S
Sbjct: 193 PVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVEDVYLMRD-EYRQS 250
Query: 67 RGFGFISYDSFEASDSAIEAMNGQYL---CNRQITVSYAYKKDTKGERHGTPAERVLAAS 123
RG GF+ Y S E + +AI+ +NG Y CN+ + V +A K K A V S
Sbjct: 251 RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGS 310
Query: 124 NPTAQKSRPH 133
P Q S P
Sbjct: 311 GPRFQASGPR 320
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 8 PIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNS 66
P++V A +++ + + LF+G+L+ EK + + F FG V + +MRD + S
Sbjct: 193 PVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVEDVYLMRD-EYRQS 250
Query: 67 RGFGFISYDSFEASDSAIEAMNGQYL---CNRQITVSYAYKKDTKGERHGTPAERVLAAS 123
RG GF+ Y S E + +AI+ +NG Y CN+ + V +A K K A V S
Sbjct: 251 RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGS 310
Query: 124 NPTAQKSRPH 133
P Q S P
Sbjct: 311 GPRFQASGPR 320
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
+ +F+G + DE L + FS +G +V + KI+ D +TG SRGF F+++ S E + +A+
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVV-DAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 85 EAMNGQYLCNRQITVSYA 102
+ ++GQ L R+I V+YA
Sbjct: 93 Q-LDGQDLHGRRIRVNYA 109
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 15 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY 74
S+D +D +++GNL V +++L + FS G +V+ K+ R P T S GFGF+++
Sbjct: 167 SEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVS-AKVSRVPGTSKSTGFGFVTF 225
Query: 75 DSFEASDSAIEAMNGQYLCNRQITVSYA 102
S E ++AI A+N L ++I V+ A
Sbjct: 226 SSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 15 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY 74
S+D +D +++GNL V +++L + FS G +V+ K+ R P T S GFGF+++
Sbjct: 167 SEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVS-AKVSRVPGTSKSTGFGFVTF 225
Query: 75 DSFEASDSAIEAMNGQYLCNRQITVSYA 102
S E ++AI A+N L ++I V+ A
Sbjct: 226 SSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 22 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 81
+V F+ LD D DEK L D FS FG ++ + KI+ D DTG SR FGF++++ ++
Sbjct: 4 NVEYTCFVRGLDQDTDEKDLTDIFSKFGNVI-DSKIIYDRDTGKSRRFGFVTFEEEKSMT 62
Query: 82 SAIEAMN 88
AI M+
Sbjct: 63 DAIMIMD 69
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G+L P+V + +L DTF V K++ D TG S+G+GF+ + A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 87 MNGQYLCNRQITVSYAYKKD 106
MNGQY R + + A K+
Sbjct: 216 MNGQYCSTRPMRIGPAANKN 235
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Query: 11 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 70
+N Q +S LFIG + D DE+ L + F +G +V IMRD TG +RGFG
Sbjct: 1 MNPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVE-AVIMRDRTTGRARGFG 59
Query: 71 FISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKG--ERHGTPAERVLAASNPTAQ 128
FI + ++ I M+ + R + A +D + +RH +P + +
Sbjct: 60 FIVFADPSVAERVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGG 117
Query: 129 KSRPHTLFASGPPT 142
+R +F G P+
Sbjct: 118 GARTKKIFVGGLPS 131
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 5/118 (4%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFIG + D DE+ L + F +G +V IMRD TG +RGFGFI + ++ I
Sbjct: 14 LFIGGISWDTDEERLQEYFGKYGDLVE-AVIMRDRTTGRARGFGFIVFADPSVAERVI-- 70
Query: 87 MNGQYLCNRQITVSYAYKKDTKG--ERHGTPAERVLAASNPTAQKSRPHTLFASGPPT 142
M+ + R + A +D + +RH +P + + +R +F G P+
Sbjct: 71 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 128
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 4 LYGKPIRVNKASQ--DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP 61
L GK IRV + + D + VG N+F+ NL V +L D F FG IV+ K+
Sbjct: 90 LNGKMIRVMWSVRAPDARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIVS-CKVATLE 147
Query: 62 DTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 105
D G SRG+GF+ ++ +A+ +AI+ +N + +++I V KK
Sbjct: 148 D-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 23 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDS 82
V A+L++G+L P V E +LYD F+ F + T+ ++ +D +G S +G+ ++ S + ++
Sbjct: 22 VTASLYVGDLHPSVTEGILYDAFAEFKSL-TSVRLCKDASSGRSLCYGYANFLSRQDANL 80
Query: 83 AIEAMNGQYLCNRQITVSYAYK 104
AIE N L + I V ++ +
Sbjct: 81 AIEKKNNSLLNGKMIRVMWSVR 102
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
NL++ NLD DV E LL + F+ FG IV+ I +D + RG+ F+++D+ E + A E
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVS-LAIAKDENRL-CRGYAFVNFDNPEDARRAAE 259
Query: 86 AMNGQYLCNRQITVSYAYKK 105
+NG ++ + V A KK
Sbjct: 260 TVNGTKFGSKCLYVGRAQKK 279
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 16 QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYD 75
+++K + +N+++ N++ V E+ L FS G I T+ K+M D + G S+GFGF+ +
Sbjct: 295 EEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTI-TSTKLMCD-EKGKSKGFGFVCFS 352
Query: 76 SFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 108
+ E + A++ +GQ + + V+ A KK+ +
Sbjct: 353 TPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDR 385
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 6/105 (5%)
Query: 6 GKPIRVNKASQ---DKKSL--DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 60
G+ ++VN A + +K+ L + LF+GNL V + L F G +V +++ D
Sbjct: 153 GRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVV-GARVVFD 211
Query: 61 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 105
DTG SRG+GF+ Y S ++A+E+++G L R I V+ A K
Sbjct: 212 GDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 28 FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAM 87
F+ V E L FS FG VTN KI+ + T S G+G++ ++S E + SA+EAM
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQ-VTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 88 NGQYLCNRQITVSY 101
NG++ R I V +
Sbjct: 139 NGKFFDGRFILVKF 152
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
L++ N+ D L D F FG +++ + R+P TG SRG G+++ S ++ AI
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAI 167
Query: 85 EAMNGQYLCNRQITVSYA 102
+++G + R++ V Y+
Sbjct: 168 ASLDGTEVGGREMRVRYS 185
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 6/99 (6%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LF G+L +V++ +L F+ F K++RD TG ++G+GF+S+ + +A++
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTF-NMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKE 197
Query: 87 MNGQYLCNRQITV-SYAYKKDTKGERHGTPAERVLAASN 124
MNG+Y+ NR I + ++K+ T E AER SN
Sbjct: 198 MNGKYVGNRPIKLRKSSWKERTDQE----AAERQKHHSN 232
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFIG + D DE+ L D FS +G +V IMRD TG +RGFGFI + S+ I
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVE-AVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 87 MNGQYLCNRQITVSYAYKKDTKG--ERHGTPAERVLAASNPTAQKSRPHTLFASGPPT 142
M+ + R + A +D + +RH +P + S R +F G P+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASP---IHLMSPVHGGGGRTKKIFVGGLPS 119
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFIG + D DE+ L D FS +G +V IMRD TG +RGFGFI + S+ I
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVE-AVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 87 MNGQYLCNRQITVSYAYKKDTKG--ERHGTPAERVLAASNPTAQKSRPHTLFASGPPT 142
M+ + R + A +D + +RH +P + S R +F G P+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASP---IHLMSPVHGGGGRTKKIFVGGLPS 119
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFIG + D DE+ L D FS +G +V IMRD TG +RGFGFI + S+ I
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVE-AVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 87 MNGQYLCNRQITVSYAYKKDTKG--ERHGTPAERVLAASNPTAQKSRPHTLFASGPPT 142
M+ + R + A +D + +RH +P + S R +F G P+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASP---IHLMSPVHGGGGRTKKIFVGGLPS 119
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFIG + D DE+ L D FS +G +V IMRD TG +RGFGFI + S+ I
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVE-AVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 87 MNGQYLCNRQITVSYAYKKDTKG--ERHGTPAERVLAASNPTAQKSRPHTLFASGPPT 142
M+ + R + A +D + +RH +P + S R +F G P+
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASP---IHLMSPVHGGGGRTKKIFVGGLPS 119
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 26 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 85
LF+ L + L D F++FG +V + +++ D D+G S+GFGF++Y + E ++ A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLV-DARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Query: 86 AMNGQYL 92
MN ++L
Sbjct: 94 EMNAKFL 100
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
LFIG + D DE LL + FS FG ++ +MR+ TG RGFGF+++ D ++
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVL-QVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ- 65
Query: 87 MNGQYLCNRQITVSYAYKKDTK 108
+ ++ NR + V A ++ +
Sbjct: 66 -DKHHIDNRDVDVKRAMSREEQ 86
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G + V E L D F+ +G +V + +++RD +T SRGFGF+ +DS E D +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEH-QVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 87 MNGQYLCNRQITVSYAYKKDT 107
N + + Q+ + A K +
Sbjct: 170 GNMIDMADTQVEIKKAEPKKS 190
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
L++G L +V+E +L+ F FG I + K D R FGF+++ E + +A++
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDI-KDVKTPLDQANQKHRSFGFVTFLEREDASAAMDN 73
Query: 87 MNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSR 131
M+G L R +TV+YA + KG G A + A ++ ++ +
Sbjct: 74 MDGAELYGRVLTVNYALPEKIKGGEQGWAAHPLWADADTWFERQQ 118
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 23 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDS 82
+ A LF+ L ++ L FS FG I +++RD +T +GFGFI++DS + +
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQI-KEARLIRDSETQRPKGFGFITFDSEDDARK 63
Query: 83 AIEAMNGQYLCNRQITVSYA 102
A+++++G+ + R I V A
Sbjct: 64 ALKSLDGKIVDGRLIFVEVA 83
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
L++GNL ++ E L F AFG + ++ DP+TG +GFGFI + E S +A A
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVEL-VQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 87 MNGQY-LCNRQITVS 100
+NG+ + R I VS
Sbjct: 326 LNGKLEIAGRTIKVS 340
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G + VD+ + F FG + + +IMRD TG SRGFGF++Y+S + D +
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEH-QIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 87 MNGQYLCNRQITVSYAYKK 105
N L Q+ + A K
Sbjct: 191 GNRIELSGTQVEIKKAEPK 209
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G L V E F+ FG+I T+ +M D T RGFGFISYDS EA D ++
Sbjct: 48 IFVGGLASSVTEAEFKKYFAQFGMI-TDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 106
Query: 87 MNGQYLCNRQITVSYAYKKD 106
+ L + + V A KD
Sbjct: 107 TFHE-LNGKMVEVKLAVPKD 125
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G L V E F+ FG+I T+ +M D T RGFGFISYDS EA D ++
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMI-TDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 87 MNGQYLCNRQITVSYAYKKD 106
+ L + + V A KD
Sbjct: 167 TFHE-LNGKMVEVKLAVPKD 185
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G L V E F+ FG+I T+ +M D T RGFGFISYDS EA D ++
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMI-TDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 87 MNGQYLCNRQITVSYAYKKD 106
+ L + + V A KD
Sbjct: 167 TFHE-LNGKMVEVKLAVPKD 185
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
L++ N+ D L D F FG +++ ++ R+P TG SRG G+++ S ++ AI
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVIS-VEVSRNPQTGESRGSGYVTMGSINSAKIAI 166
Query: 85 EAMNGQYLCNRQITVSYA 102
+++G + R++ V Y+
Sbjct: 167 ASLDGTEVGGREMRVRYS 184
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G L V E F+ FG+I T+ +M D T RGFGFISYDS EA D ++
Sbjct: 130 IFVGGLASSVTEAEFKKYFAQFGMI-TDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 188
Query: 87 MNGQYLCNRQITVSYAYKKD 106
+ L + + V A KD
Sbjct: 189 TFHE-LNGKMVEVKLAVPKD 207
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 41 LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVS 100
LY F+ +G +V + I RD TG+SRGF F+ Y + + A+E ++G+ + R+ITV
Sbjct: 32 LYPLFAKYGKVV-DVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQ 90
Query: 101 YA 102
+A
Sbjct: 91 FA 92
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 41 LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVS 100
LY F+ +G +V + I RD TG+SRGF F+ Y + + A+E ++G+ + R+ITV
Sbjct: 32 LYPLFAKYGKVV-DVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQ 90
Query: 101 YA 102
+A
Sbjct: 91 FA 92
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 22 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 81
+V F+G L +++ L TFS FG ++ + KI+ D ++G SRGFGF+++ +A
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVI-DSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 82 SAIEAMN 88
AIE MN
Sbjct: 62 DAIEEMN 68
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 25 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 84
A +++G + D+ E L FS +G IV + ++RD TG S+GF F++Y+ ++ A+
Sbjct: 36 AYVYVGGIPFDLTEGDLLAVFSQYGEIV-DVNLIRDKGTGKSKGFAFLAYEDQRSTILAV 94
Query: 85 EAMNGQYLCNRQITVSY--AYKK 105
+ +NG + R I V + AYKK
Sbjct: 95 DNLNGALVLGRTIKVDHCGAYKK 117
>AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357570-6359024 REVERSE LENGTH=126
Length = 126
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 28 FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAM 87
F+ V E L FS FG VTN KI+ + T S G+G++ ++S E + SA+EAM
Sbjct: 61 FVKGFSDSVSEGRLKKVFSEFGQ-VTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 88 NGQ 90
NG+
Sbjct: 120 NGK 122
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 9 IRVNKASQ---DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN 65
R+N AS DK+ +F+G+L DV + +L +TF A V K++ D TG
Sbjct: 136 FRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195
Query: 66 SRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVS-YAYKKDTKGER 111
++G+GF+ + A+ MNG R + + A KK G+R
Sbjct: 196 TKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 17 DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDS 76
D K++ +F+G L P ++E L + F +G I+ + +IM D TG SRGFGF+++ +
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEH-QIMYDHHTGRSRGFGFVTFQT 207
Query: 77 FEASDSAIEAMNGQYLCNRQITVSYAYKKDT 107
++ D L ++Q+ + A K T
Sbjct: 208 EDSVDRLFSDGKVHELGDKQVEIKRAEPKRT 238
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 9 IRVNKASQ---DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN 65
R+N AS DK+ +F+G+L DV + +L +TF A V K++ D TG
Sbjct: 136 FRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195
Query: 66 SRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVS-YAYKKDTKGER 111
++G+GF+ + A+ MNG R + + A KK G+R
Sbjct: 196 TKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 27 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEA 86
+F+G + V E L D F+ +G +V + +++RD +T SRGFGF+ +DS E D +
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEH-QVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 87 MNGQYLCNRQITV 99
N + + Q+++
Sbjct: 170 GNMIDMADTQVSL 182