Miyakogusa Predicted Gene

Lj0g3v0253719.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0253719.1 Non Chatacterized Hit- tr|I6M4F5|I6M4F5_COFCA
Uncharacterized protein OS=Coffea canephora PE=4
SV=1,100,0.0000000002,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.16647.1
         (185 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs...    64   5e-11

>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
           family protein | chr2:8031554-8033517 REVERSE LENGTH=363
          Length = 363

 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/30 (93%), Positives = 28/30 (93%)

Query: 1   MNGQYLCNRQITVSYAYKKDTKGERHGTPA 30
           M GQYL NRQITVSYAYKKDTKGERHGTPA
Sbjct: 174 MTGQYLSNRQITVSYAYKKDTKGERHGTPA 203