Miyakogusa Predicted Gene

Lj0g3v0253369.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0253369.1 Non Chatacterized Hit- tr|I1PA63|I1PA63_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,35.61,1e-18,CCT,CCT domain;
seg,NULL,NODE_34062_length_1388_cov_165.608063.path2.1
         (369 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02810.1 | Symbols: PRR7, APRR7 | pseudo-response regulator 7...    93   3e-19
AT5G60100.2 | Symbols: PRR3 | pseudo-response regulator 3 | chr5...    49   7e-06
AT5G60100.3 | Symbols: PRR3 | pseudo-response regulator 3 | chr5...    49   7e-06
AT5G60100.1 | Symbols: APRR3, PRR3 | pseudo-response regulator 3...    49   7e-06

>AT5G02810.1 | Symbols: PRR7, APRR7 | pseudo-response regulator 7 |
           chr5:638283-641461 REVERSE LENGTH=727
          Length = 727

 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 86/158 (54%), Gaps = 9/158 (5%)

Query: 7   EALNRRPKSSDIENKGTNDDEEFPSLELSLKRLRGVNDAGITIQDERIVLRRSDQSAFSR 66
           EA N   K+ D         EE   +E S KR RG  D G  ++D+R VLRRS+ SAFSR
Sbjct: 406 EAPNTHLKTLDTNEASVKISEELMHVEHSSKRHRGTKDDGTLVRDDRNVLRRSEGSAFSR 465

Query: 67  YNAASNTKKSPTGCVGSNSPH-NNSLEITKKDSSRDIQSHSSGN---PPNQNSNVASNNI 122
           YN ASN  K   G +GS S   NNS ++ KK  +     HS+ N   P N  S+V SNN 
Sbjct: 466 YNPASNANKISGGNLGSTSLQDNNSQDLIKKTEAA-YDCHSNMNESLPHNHRSHVGSNNF 524

Query: 123 DMGSTT-NNAFTKSAVKSEPGVASETKCLYQTSAFQPL 159
           DM STT NNAFTK      P V+S      + S+FQPL
Sbjct: 525 DMSSTTENNAFTKPGA---PKVSSAGSSSVKHSSFQPL 559


>AT5G60100.2 | Symbols: PRR3 | pseudo-response regulator 3 |
           chr5:24198215-24200502 REVERSE LENGTH=522
          Length = 522

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 11/111 (9%)

Query: 7   EALNRRPKSSDIENKG-TNDDEEFPSLELSLKRLRGVNDAGITIQDERIVLRRSDQSAFS 65
           + LNR   +S +E+K  +++ E+  SLE +LK+ R   D  +    +R VLR S+ SAFS
Sbjct: 359 DTLNRSSGNSQVESKAPSSNREDLQSLEQTLKKTREDRDYKVG---DRSVLRHSNLSAFS 415

Query: 66  RY-NAASNTKKSPTGCVGSNSPHNNSLEITKKDSSRDIQSHSSGNPPNQNS 115
           +Y N A++ KK+P   V S SPH++ +      SS      SS NP  Q S
Sbjct: 416 KYNNGATSAKKAPEENVESCSPHDSPIAKLLGSSS------SSDNPLKQQS 460


>AT5G60100.3 | Symbols: PRR3 | pseudo-response regulator 3 |
           chr5:24198215-24200502 REVERSE LENGTH=495
          Length = 495

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 11/111 (9%)

Query: 7   EALNRRPKSSDIENKG-TNDDEEFPSLELSLKRLRGVNDAGITIQDERIVLRRSDQSAFS 65
           + LNR   +S +E+K  +++ E+  SLE +LK+ R   D  +    +R VLR S+ SAFS
Sbjct: 332 DTLNRSSGNSQVESKAPSSNREDLQSLEQTLKKTREDRDYKVG---DRSVLRHSNLSAFS 388

Query: 66  RY-NAASNTKKSPTGCVGSNSPHNNSLEITKKDSSRDIQSHSSGNPPNQNS 115
           +Y N A++ KK+P   V S SPH++ +      SS      SS NP  Q S
Sbjct: 389 KYNNGATSAKKAPEENVESCSPHDSPIAKLLGSSS------SSDNPLKQQS 433


>AT5G60100.1 | Symbols: APRR3, PRR3 | pseudo-response regulator 3 |
           chr5:24198215-24200502 REVERSE LENGTH=495
          Length = 495

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 62/111 (55%), Gaps = 11/111 (9%)

Query: 7   EALNRRPKSSDIENKG-TNDDEEFPSLELSLKRLRGVNDAGITIQDERIVLRRSDQSAFS 65
           + LNR   +S +E+K  +++ E+  SLE +LK+ R   D  +    +R VLR S+ SAFS
Sbjct: 332 DTLNRSSGNSQVESKAPSSNREDLQSLEQTLKKTREDRDYKVG---DRSVLRHSNLSAFS 388

Query: 66  RY-NAASNTKKSPTGCVGSNSPHNNSLEITKKDSSRDIQSHSSGNPPNQNS 115
           +Y N A++ KK+P   V S SPH++ +      SS      SS NP  Q S
Sbjct: 389 KYNNGATSAKKAPEENVESCSPHDSPIAKLLGSSS------SSDNPLKQQS 433