Miyakogusa Predicted Gene

Lj0g3v0252939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0252939.1 Non Chatacterized Hit- tr|I1MKV7|I1MKV7_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,47.92,0.0000002,
,CUFF.16621.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G09360.1 | Symbols:  | Cyclin/Brf1-like TBP-binding protein |...    51   2e-07

>AT3G09360.1 | Symbols:  | Cyclin/Brf1-like TBP-binding protein |
          chr3:2873796-2878432 FORWARD LENGTH=604
          Length = 604

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 1  MMFCDLCVKFVTGLRINDALVCCNECGKMLVNLFMPEEPNFEKNSAGQ 48
          M++C+ CVK V G+R  D  + CN CG++L N     E  F KN+AGQ
Sbjct: 1  MVWCNHCVKNVPGIRPYDGALACNLCGRILENFHFSTEVTFVKNAAGQ 48