Miyakogusa Predicted Gene

Lj0g3v0252879.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0252879.3 Non Chatacterized Hit- tr|D8SXF4|D8SXF4_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,47.14,0.00000000000006,zinc finger,Zinc finger, CCCH-type;
seg,NULL; GB DEF: ARABIDOPSIS THALIANA GENOMIC DNA, CHROMOSOME
5,CUFF.16615.3
         (701 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56930.1 | Symbols: emb1789 | CCCH-type zinc finger family pr...   167   2e-41

>AT5G56930.1 | Symbols: emb1789 | CCCH-type zinc finger family
           protein | chr5:23027949-23030565 REVERSE LENGTH=675
          Length = 675

 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/269 (39%), Positives = 142/269 (52%), Gaps = 64/269 (23%)

Query: 381 LGVERLKLLPVQ-KEKTISYCRHYLYGRCNEGDKCQFSHDTVPKTKSKACHHFARHSCMK 439
           LGV++LKL PV  K K I YCRHYL GRC+EGDKC+FSHDT+P+TK   C +FA  SCMK
Sbjct: 336 LGVKKLKLKPVAPKPKPIKYCRHYLKGRCHEGDKCKFSHDTIPETKCSPCCYFATQSCMK 395

Query: 440 GDDCPYDHELSKYPCNNFVSSGSCWRGDTCMFSHQVPANQDIPTPS-NVCKPQAASPLNN 498
           GDDCP+DH+LSKYPCNNF++ G C+RGD+C+FSH+        TPS NV    +++ +  
Sbjct: 396 GDDCPFDHDLSKYPCNNFITKGFCYRGDSCLFSHKGTPQSASDTPSANVT--VSSTKITA 453

Query: 499 HGF---KSIQQNHLKGISSL-------------IKP----DHNMVADTSQ---------- 528
             F   K+ +Q+    I+ L             +KP    +    +D S           
Sbjct: 454 ASFSPQKTKKQSVRDAIAKLPAIQARVSSSVAFLKPSSHSNQRNSSDASSSKINEHVTPP 513

Query: 529 -----KQPTPAPKGIRFINAAKLSPSPSTLKQGMLTPNKESLVQHGTLADRSASGTSTTQ 583
                ++P+ APKG+ F++  K S                   Q  T+   SAS  +T  
Sbjct: 514 QVPPLRKPSVAPKGMSFLSLDKTS-------------------QEDTVKASSASKPNTDN 554

Query: 584 SIVEISKK------LPAVAPKGINFLSFG 606
           S  +  K+      LP   PKGI+FLSF 
Sbjct: 555 SDSQTLKQSQQGSFLPLGPPKGISFLSFA 583