Miyakogusa Predicted Gene

Lj0g3v0252839.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0252839.1 Non Chatacterized Hit- tr|B9T7V3|B9T7V3_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,46.88,2e-17,seg,NULL,CUFF.16590.1
         (327 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23850.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   125   3e-29
AT1G23840.1 | Symbols:  | unknown protein; LOCATED IN: endomembr...   109   3e-24
AT1G23830.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    78   8e-15

>AT1G23850.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G23840.1); Has 47 Blast hits to 40 proteins in
           5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:8425981-8427045 REVERSE
           LENGTH=354
          Length = 354

 Score =  125 bits (315), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 169/350 (48%), Gaps = 55/350 (15%)

Query: 21  DVLREAVMIYFRNLNFIIFTFLTSLPLLFIMLYFEIHLQEILLETSLILNQPHAHSLYHH 80
           ++L+ A  +   N+N ++F FL SLPL   +++FE+ LQ  +   S  L +   +  Y++
Sbjct: 11  NILKRATKLLCGNINLVLFLFLCSLPLFCFLIFFELSLQTTVSLASQYLVRQLTNWDYYY 70

Query: 81  GFNPDSIMRIFNMDYVLKLIHLGFIYMVPLHLFELGSAIFTIDLASKQQYSEEKKVTLNL 140
                S++     + +  LI    +Y+ P  L +L +    +  +     SEE+   L  
Sbjct: 71  VPQDASVLE----NLIPLLIQTFLLYLFPYGLIDLFTTTTIVSASWTVHTSEEEP--LRF 124

Query: 141 KEIIFQKPLDL--SNLRGTFVTSIYVLFLTTTHQLGLLWIVINY-HVFL----------- 186
            +++ ++ +++  + L G  +TS+YVL L+T    G L++  NY H+             
Sbjct: 125 GQLV-RRTVEICQNRLEGCLITSLYVLLLSTPVFFGFLFVATNYFHIISLTGSGENSYYY 183

Query: 187 -----KDLSCY-----------MLFFVICSL----VFAKVLRTCLEWSAMWNMSLVISVL 226
                +D   Y           MLF  + ++    +F  +L    +WSA WNM LV+SVL
Sbjct: 184 SINIEEDAEGYYRSSSVNSPVKMLFDAVLAMFHGAIFLGLLAMFSKWSAGWNMGLVVSVL 243

Query: 227 ER------VYGVDALALSVYFSRGCHRRGLFLMLIFFSWGHLLRLSC------HHLIGEQ 274
           E       +YG DAL LS  + +G  +RGL +ML+F  +   +R+ C          G +
Sbjct: 244 EEEENGQSIYGTDALTLSSNYGKGHEKRGLQVMLVFLVFAIAMRMPCFCFKCTESSNGNR 303

Query: 275 GTWSGFYIQVGLFCLVNPLKWVVFMIYFHDCKERSLEKKTDEELGKDVKV 324
             ++ FY  VGL C+ N +KWV  ++++ DC+   LEKK D E+G   K 
Sbjct: 304 VLYTSFY--VGLICVGNMIKWVACVVFYEDCRTSVLEKKGDVEIGSKGKT 351


>AT1G23840.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane
           system; EXPRESSED IN: 18 plant structures; EXPRESSED
           DURING: 12 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G23850.1);
           Has 53 Blast hits to 48 proteins in 5 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:8424321-8425337 REVERSE LENGTH=338
          Length = 338

 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 156/340 (45%), Gaps = 49/340 (14%)

Query: 18  EVSDVLREAVMIYFRNLNFIIFTFLTSLPLLFIMLYFEIHLQEILLETSLILNQPHAHSL 77
            V ++L+ A+ + F N+N  +F FL SLPL   +++FE+ LQ     T++ L   +   L
Sbjct: 10  SVIELLKRALKLLFGNINLALFLFLCSLPLFCFLIFFELSLQ-----TTVSLASTYISKL 64

Query: 78  YHHGFNPDSIMRIFNMDYVLKLIHLGFIYMVPLHLFELGSAIFTIDLASKQQYSEEKKVT 137
                  +S   +   D +  LI    +Y  P  + +L +    +  +S    SEE+ + 
Sbjct: 65  V------NSEEDLSENDLLPWLIQTTLLYFFPYTILDLLTTTTIVAASSIAYTSEEEPLG 118

Query: 138 LNLKEIIFQKPLDLSNLRGTFVTSIYVLFLTTTHQLGLLWIVINYHVFLKDLSCYMLFF- 196
           L L  +     L  + + G  +TS+YVL L+T+  LGL      Y  F        +FF 
Sbjct: 119 L-LYLVGRSFKLCQNKVGGCLITSLYVLLLSTSVFLGLFSGSTIYLYFASLTLEQQIFFN 177

Query: 197 ----------------------VICSLVFAKVLRTCLEWSAMWNMSLVISVLER------ 228
                                 +I   VF  +     +WSA WN+S+V+SVLE       
Sbjct: 178 QAVVQDQRFLEQAVVLLDVVVVLIHGTVFIVLAAKFSKWSAGWNISMVVSVLEEEEDSKG 237

Query: 229 VYGVDALALSVYFSRGCHRRGLFLMLIFFSWGHLLRLSC------HHLIGEQGTWSGFYI 282
           +YG  AL+LS ++ RG  +R  ++ML+F     + R+ C        L G    ++G Y 
Sbjct: 238 IYGSSALSLSAWYLRGQEKRDFWMMLVFLVGALVTRMPCLYYKCSESLSGNGVLYTGLY- 296

Query: 283 QVGLFCLVNPLKWVVFMIYFHDCKERSLEKKTDEELGKDV 322
            V L C+ N +KWV  ++++HDC  R L KK D E+G   
Sbjct: 297 -VSLICVGNVVKWVSCVVWYHDCNTRVLRKKGDVEIGSKA 335


>AT1G23830.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 12 plant structures; EXPRESSED
           DURING: 9 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G23840.1);
           Has 57 Blast hits to 52 proteins in 7 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:8423003-8424040 REVERSE LENGTH=345
          Length = 345

 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 163/345 (47%), Gaps = 55/345 (15%)

Query: 18  EVSDVLREAVMIYFRNLNFIIFTFLTSLPLLFIMLYFEIHLQEILLETS------LILNQ 71
            V ++L+ A+ + F N+N ++F  L SLPL F +++FE+ LQ  +  TS      LIL +
Sbjct: 10  SVIELLKRALKLLFGNINLLLFLCLCSLPLFFFLIFFELSLQTTVYLTSQFLWKLLILGE 69

Query: 72  PHAHSLYHHGFNPDSIMRIFNMDYVLKLIHLGFIYMVPLHLFELGSAIFTIDLASKQQYS 131
                      N   ++     D +  LI    +Y  P  + +L +    +  +S    S
Sbjct: 70  DLPE-------NDLILISEKKNDLISWLIQTFLLYFFPYTILDLLTTTTIVAASSIVYTS 122

Query: 132 EEKKVTLNLKEIIFQKPLDLSNLR--GTFVTSIYVLFLTT------------------TH 171
           +E+ + L     + ++ + +   R  G  +TS+YVL  +T                  T+
Sbjct: 123 KEEPLGL---LYLVERSIKICQNRVGGCLITSLYVLLWSTSVFLFFFLFFFLQFLSGSTN 179

Query: 172 QLGLLWIVINYHVF------LKDLSCYMLFFVICSLVFAKVLRTCLEWSAMWNMSLVISV 225
            + + ++   Y  F      L ++   +   + C+L F  +     +WS+ WNM LV+SV
Sbjct: 180 YVSIPYLSREYKGFHYQPTGLFNVVVPLTLLMQCTL-FIVLTAKYSKWSSGWNMGLVVSV 238

Query: 226 LER------VYGVDALALSVYFSRGCHRRGLFLMLIFFSWGHLLRLSCHH----LIGEQG 275
           LE       +YG DAL+LS ++ +G  +R L+LML+F  +G   R+ C +      G   
Sbjct: 239 LEEDEDGQGIYGGDALSLSGWYRKGHEKRDLWLMLMFLVFGLATRMPCLYSKCSASGNGV 298

Query: 276 TWSGFYIQVGLFCLVNPLKWVVFMIYFHDCKERSLEKKTDEELGK 320
            ++GFY  VGL C+ N LKWV  +  +HDCK   L KK D E  K
Sbjct: 299 MYTGFY--VGLICVGNLLKWVTCLACYHDCKTMVLRKKRDVEQAK 341