Miyakogusa Predicted Gene

Lj0g3v0252719.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0252719.1 Non Chatacterized Hit- tr|D8RVD9|D8RVD9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,35.06,0.00000000000003,ZF_RING_2,Zinc finger, RING-type;
ZF_RING_1,Zinc finger, RING-type, conserved site; no
description,Z,CUFF.16594.1
         (313 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...   135   3e-32
AT3G05670.1 | Symbols:  | RING/U-box protein | chr3:1653888-1657...    55   4e-08

>AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein / BRCT domain-containing protein |
           chr1:25130099-25132169 FORWARD LENGTH=453
          Length = 453

 Score =  135 bits (341), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 96/155 (61%), Gaps = 5/155 (3%)

Query: 164 SCVICFEDFSSTLGVLPCEHTFCLTCIQRWAHQRISMGKISTCPLCKASFAWYKIFEHPA 223
           SC+IC+ +FSS+ G+LPC H FC +CIQ+WA + +S  K +TCPLCK++F      E   
Sbjct: 299 SCIICWTEFSSSRGILPCGHRFCYSCIQKWADRLVSERKKTTCPLCKSNFITITKIEDAD 358

Query: 224 TADKKLNSQTVP----CDNLASVTYIPMDQELPDNSFEDGA-CVVCRTRGPDDLIETCNV 278
           ++D+K+ SQTVP     +N+  V     +Q    N     + C  C    P++L+  C++
Sbjct: 359 SSDQKIYSQTVPDLSSTNNILVVLPEEEEQRQTLNPLTRASGCSRCYLTEPEELLIRCHL 418

Query: 279 CWTRRIHSYCMDPPTYPWTCTHCKELRMLYRNQSY 313
           C  RRIHSYC+DP   PWTC HC +L+M+Y  ++Y
Sbjct: 419 CNFRRIHSYCLDPYLLPWTCNHCNDLQMMYHRRNY 453


>AT3G05670.1 | Symbols:  | RING/U-box protein | chr3:1653888-1657022
           FORWARD LENGTH=883
          Length = 883

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 64/153 (41%), Gaps = 22/153 (14%)

Query: 165 CVICF--EDFSSTLGVLPC-EHTFCLTCIQRWAHQRISMGKISTCPLCKASFAWYKIFEH 221
           C IC   ED     G L C  H FC TCI  W+         S CPLCK  F   +    
Sbjct: 413 CGICLSEEDMRRLKGTLDCCSHYFCFTCIMEWSKVE------SRCPLCKQRF---RTISK 463

Query: 222 PA--TADKKLNSQTVPCDNLASVTYIPMDQELPD--NSFEDGACVVCRTRGPDDLIETCN 277
           PA  T    L    +P      V Y P ++EL    + +E+  C  C     D L+  C+
Sbjct: 464 PARSTPGVDLREVVIPVPERDQV-YQPTEEELRSYLDPYENIICTECHQGDDDGLMLLCD 522

Query: 278 VCWTRRIHSYCM----DPPTYPWTCTHCKELRM 306
           +C +   H+YC+    + P   W C  C+ + +
Sbjct: 523 LCDS-SAHTYCVGLGREVPEGNWYCEGCRPVAL 554