Miyakogusa Predicted Gene

Lj0g3v0252619.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0252619.1 CUFF.16577.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35035.1 | Symbols: URED | urease accessory protein D | chr2:...   127   2e-30
AT2G35035.2 | Symbols: URED | urease accessory protein D | chr2:...   118   1e-27

>AT2G35035.1 | Symbols: URED | urease accessory protein D |
           chr2:14763387-14765045 REVERSE LENGTH=294
          Length = 294

 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 87/121 (71%), Gaps = 3/121 (2%)

Query: 8   MLLEKEKIGCIKNHMQDYQVIAMIVLLGPNMQYIQKLVQDNVKRIMSEKLQHPSAALNHQ 67
           +LLEK  I  I   MQDYQ IAM++L G  ++ IQK VQ+NVK +MSE+LQ   ++  H+
Sbjct: 174 VLLEKRSIQSIAERMQDYQAIAMVILFGAKLKEIQKQVQENVKNMMSEQLQLSYSSRRHK 233

Query: 68  RDKA--DHFMTKPNFMASCSVFGPKKIGLLVRVASVTTKSVYKFLQHQLAPLEPIIGVSP 125
            + +  + FM KP F+ASCS FGP+  G++VR+AS +T+SVY FL+ QLA LEP++G +P
Sbjct: 234 SESSSRNRFM-KPEFIASCSTFGPEGKGVVVRIASDSTESVYNFLRQQLAELEPVLGQAP 292

Query: 126 Y 126
           Y
Sbjct: 293 Y 293


>AT2G35035.2 | Symbols: URED | urease accessory protein D |
           chr2:14763260-14765045 REVERSE LENGTH=264
          Length = 264

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 81/114 (71%), Gaps = 3/114 (2%)

Query: 8   MLLEKEKIGCIKNHMQDYQVIAMIVLLGPNMQYIQKLVQDNVKRIMSEKLQHPSAALNHQ 67
           +LLEK  I  I   MQDYQ IAM++L G  ++ IQK VQ+NVK +MSE+LQ   ++  H+
Sbjct: 133 VLLEKRSIQSIAERMQDYQAIAMVILFGAKLKEIQKQVQENVKNMMSEQLQLSYSSRRHK 192

Query: 68  RDKA--DHFMTKPNFMASCSVFGPKKIGLLVRVASVTTKSVYKFLQHQLAPLEP 119
            + +  + FM KP F+ASCS FGP+  G++VR+AS +T+SVY FL+ QLA LEP
Sbjct: 193 SESSSRNRFM-KPEFIASCSTFGPEGKGVVVRIASDSTESVYNFLRQQLAELEP 245